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IDSAVERM_1151 TypeCDS
From1439664 nt length888
To1440551 aa length295
Genesig15 pI4.66
Definitionputative RNA polymerase sigma factor M.W (Da)33403
Notesimilar to SCO7278, RNA polymerase alternative sigma factor, PF04539: Sigma-70 region 3 AseI frg.A
SignalP v.4.0Non-secretory protein | plot CategoryRNA initiation

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
coelSCO7278 putative RNA polymerase sigma factor4757.0e-172
samSAM23877_0936 RNA polymerase sigma-F factor4914.0e-178
bsubBG10735 sigB, rpoF; RNA polymerase general stress sigma factor1691.8e-43

*coel, Streptomyces coelicolor A3(2); sam, Streptomyces ambofaciens ATCC 23877; bsub, Bacillus subtilis;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r41Sigma-70, region 4236-28261.53.5e-17

Sigma70_r21Sigma-70 region 266-13560.41e-16

Sigma70_r31Sigma-70 region 3145-21853.12.4e-14

KORA1TrfB plasmid transcriptional repressor226-29332.38.2e-08

Sigma70_r4_21Sigma-70, region 4234-28031.59.4e-08

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_040895275.1 MULTISPECIES: RNA polymerase sigma factor SigF [Streptomyces... 12962.9e-179
WP_030377988.1 MULTISPECIES: RNA polymerase sigma factor SigF [unclassified... 12884.8e-178
WP_220290474.1 RNA polymerase sigma factor SigF [Streptomyces sp. MBT84] >l... 12851.8e-177
EGG46892.1 RNA polymerase sigma factor [Streptomyces griseoaurantiacus M045] 12842.2e-177
WP_059127988.1 RNA polymerase sigma factor SigF [Streptomyces sp. NRRL F-51... 12808.9e-177
WP_055489289.1 RNA polymerase sigma factor SigF [Streptomyces sp. TP-A0356] 12801.1e-176
12746.8e-176
WP_234516140.1 RNA polymerase sigma factor SigF [Streptomyces glomeratus] >... 12502.8e-172
WP_121750650.1 RNA polymerase sigma factor SigF [Streptomyces sp. E2N166] 12234.7e-168
WP_094051842.1 RNA polymerase sigma factor SigF [Streptomyces sp. XY006] >g... 12131.6e-166

PSORT result

LocalizationCertaintyPSORT said
cytoplasm0.3727 Seems to have no N-terminal signal seq.