| ID | SAVERM_1212
| Type | CDS
|
| From | 1503492
| nt length | 1374
|
| To | 1504865
| aa length | 457
|
| Gene | phrB
| pI | 8.65
|
| Definition | putative deoxyribodipyrimidine photolyase
| M.W (Da) | 50911
|
| Note | PF03441: FAD binding domain of DNA photolyase
| AseI frg. | U
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | DNA modification & repair
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO0842 SCF43A.32 putative deoxyribodipyrimidine photolyase | 674 | 0.0e+00
|
| sgr | SGR_5882 deoxyribodipyrimidine photo-lyase | 631 | 0.0e+00
|
| sam | SAM23877_7082 Deoxyribodipyrimidine photo-lyase | 641 | 0.0e+00
|
| scab | SCAB85141 putative deoxyribodipyrimidine photolyase | 702 | 0.0e+00
|
| sace | SACE_4097 putative deoxyribodipyrimidine photolyase | 475 | 7.0e-167
|
| nfar | nfa30660 phr deoxyribodipyrimidine photolyase | 443 | 1.6e-125
|
| cglu | gi|19551863 COG0415:Deoxyribodipyrimidine photolyase [Corynebacterium glutamicum] | 197 | 6.5e-52
|
| ecoli | gi|16128683 deoxyribodipyrimidine photolyase (photoreactivation) [Escherichia coli K12] | 233 | 1.5e-62
|
| paer | PA4660 [gene=phr] [prot=deoxyribodipyrimidine photolyase] [comment=PA4660] | 233 | 2.7e-62
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; cglu, Corynebacterium glutamicum; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| FAD_binding_7 | 1 | FAD binding domain of DNA photolyase | 262-447 | 240.7 | 8.7e-72
|
| DNA_photolyase | 1 | DNA photolyase | 4-163 | 134.4 | 3.3e-39
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_200400625.1 | DNA photolyase family protein [Streptomyces sp. ZYC-3] >gb
| 1857 | 0.0e+00 |
| WP_189839040.1 | DNA photolyase family protein [Streptomyces umbrinus] >dbj
| 1820 | 0.0e+00 |
| WP_190228395.1 | DNA photolyase family protein [Streptomyces umbrinus] >dbj
| 1808 | 0.0e+00 |
| WP_143633871.1 | DNA photolyase family protein [Streptomyces sp. IB201691-2A2...
| 1803 | 0.0e+00 |
| WP_055610454.1 | DNA photolyase family protein [Streptomyces phaeochromogenes...
| 1795 | 0.0e+00 |
| WP_217457526.1 | DNA photolyase family protein [Streptomyces sp. BV286] >lcl
| 1793 | 0.0e+00 |
| WP_210893618.1 | DNA photolyase family protein [Streptomyces sp. BH-SS-21] >l...
| 1768 | 0.0e+00 |
| WP_235458253.1 | DNA photolyase family protein [Streptomyces olivochromogenes...
| 1761 | 0.0e+00 |
| WP_127181929.1 | DNA photolyase family protein [Streptomyces griseoviridis] >...
| 1753 | 0.0e+00 |
| WP_093831964.1 | MULTISPECIES: DNA photolyase family protein [unclassified St...
| 1749 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.2783 | Seems to have no N-terminal signal seq.
|