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IDSAVERM_1215 TypeCDS
From1507710 nt length615
To1508324 aa length204
GenelitS pI10.61
Definitionputative RNA polymerase ECF-subfamily sigma factor (sig17) M.W (Da)22571
Noteprobably sigma factor for transcription of carotenoid biosynthesis, PF04542: Sigma-70 region 2 AseI frg.U
SignalP v.4.0Non-secretory protein | plot CategoryRNA initiation

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
coelSCO0194 putative sigma factor2024.0e-67
samSAM23877_7075 RNA polymerase sigma factor2091.0e-69
scabSCAB5471 putative RNA polymerase ECF-subfamily sigma factor (sig17)2513.0e-86

*coel, Streptomyces coelicolor A3(2); sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 246-11358.73.4e-16

Sigma70_r41Sigma-70, region 4148-19650.78.6e-14

Sigma70_r4_21Sigma-70, region 4143-19450.51.1e-13

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_190035891.1 sigma-70 family RNA polymerase sigma factor [Streptomyces fr... 6386.2e-82
WP_108012806.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 6282.4e-80
WP_171146084.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 6263.0e-80
WP_043665941.1 sigma-70 family RNA polymerase sigma factor [Streptomyces xy... 6254.9e-80
WP_142268766.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [u... 6245.3e-80
WP_128804041.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [u... 6221.9e-79
WP_055638942.1 sigma-70 family RNA polymerase sigma factor [Streptomyces gr... 6185.9e-79
WP_020126153.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 6151.5e-78
WP_057605179.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 6132.3e-78
WP_016433278.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 6142.7e-78

PSORT result

LocalizationCertaintyPSORT said
cytoplasm0.1692 Seems to have no N-terminal signal seq.