-- | --

IDSAVERM_1310 TypeCDS
From1619721 nt length1140
To1620860 aa length379
Generho2 pI10.09
Definitionputative transcription termination factor M.W (Da)40927
NotePF00006: ATP synthase alpha/beta family, nucleotide-binding domain AseI frg.P
SignalP v.4.0Non-secretory protein | plot CategoryDNA termination

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
coelSCO7051 putative transcription terminator factor5730.0e+00
sgrSGR_6729 putative transcription termination factor5450.0e+00
samSAM23877_1040 transcription termination factor5470.0e+00
scabSCAB83621 putative transcription termination factor5850.0e+00

*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

ATP-synt_ab1ATP synthase alpha/beta family, nucleotide-binding domain115-31967.71e-18

Rho_RNA_bind1Rho termination factor, RNA-binding domain19-8455.92.7e-15

AAA_251AAA domain120-24133.62.6e-08

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_229702500.1 transcription termination factor Rho [Streptomyces albiflave... 16510.0e+00
WP_212727889.1 transcription termination factor Rho [Streptomyces mirabilis... 16420.0e+00
WP_101407447.1 transcription termination factor Rho [Streptomyces sp. RLB1-... 16410.0e+00
WP_217567064.1 transcription termination factor Rho [Streptomyces sp. GbtcB... 16330.0e+00
WP_095856272.1 MULTISPECIES: transcription termination factor Rho [unclassi... 16300.0e+00
WP_143654528.1 MULTISPECIES: transcription termination factor Rho [unclassi... 16280.0e+00
WP_075025652.1 transcription termination factor Rho [Streptomyces mirabilis... 16270.0e+00
WP_097283429.1 transcription termination factor Rho [Streptomyces sp. OK228... 16240.0e+00
WP_067373266.1 transcription termination factor Rho [Streptomyces olivochro... 16240.0e+00
WP_143612657.1 MULTISPECIES: transcription termination factor Rho [unclassi... 16230.0e+00

PSORT result

LocalizationCertaintyPSORT said
cytoplasm0.1628 Seems to have no N-terminal signal seq.