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IDSAVERM_1653 TypeCDS
From2025947 nt length951
To2024997 aa length316
GenehopD pI7.41
Definitionsqualene/phytoene synthase M.W (Da)34633
Notesqualene/hopene gene cluster, sqs1, PF00494: Squalene/phytoene synthase AseI frg.C
SignalP v.4.0Non-secretory protein | plot Categorymetabolism of lipids

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
coelSCO6760 putative phytoene synthase5330.0e+00
sgrSGR_965 putative squalene/phytoene synthase5210.0e+00
samSAM23877_6411 Phytoene synthase5470.0e+00
scabSCAB12991 squalene/phytoene synthase5380.0e+00
saceSACE_4330 putative squalene/phytoene synthase2835.0e-96
mtubgi|15610533 PROBABLE PHYTOENE SYNTHASE PHYA [Mycobacterium tuberculosis H37Rv]2292.4e-61

*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; mtub, Mycobacterium tuberculosis H37Rv;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

SQS_PSY1Squalene/phytoene synthase28-289242.84e-72

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_028798890.1 presqualene diphosphate synthase HpnD [Streptomyces sp. 142M... 14720.0e+00
WP_095937879.1 presqualene diphosphate synthase HpnD [Streptomyces sp. Tue6... 14720.0e+00
QIY99728.1 presqualene diphosphate synthase HpnD [Streptomyces sp. S1D4-11] 14710.0e+00
WP_179436356.1 MULTISPECIES: presqualene diphosphate synthase HpnD [unclass... 14700.0e+00
WP_067361282.1 presqualene diphosphate synthase HpnD [Streptomyces olivochr... 14700.0e+00
WP_054232732.1 MULTISPECIES: presqualene diphosphate synthase HpnD [Strepto... 14690.0e+00
WP_189185876.1 presqualene diphosphate synthase HpnD [Streptomyces albiflav... 14670.0e+00
WP_168498216.1 MULTISPECIES: presqualene diphosphate synthase HpnD [Strepto... 14670.0e+00
WP_153287594.1 presqualene diphosphate synthase HpnD [Streptomyces fagopyri... 14650.0e+00
WP_148012170.1 presqualene diphosphate synthase HpnD [Streptomyces sp. me10... 14640.0e+00

PSORT result

LocalizationCertaintyPSORT said
cytoplasm0.0178 Seems to have no N-terminal signal seq.