| ID | SAVERM_1697
| Type | CDS
|
| From | 2075503
| nt length | 1071
|
| To | 2076573
| aa length | 356
|
| Gene | ligC
| pI | 6.08
|
| Definition | putative DNA ligase
| M.W (Da) | 39971
|
| Note | PF01068: ATP dependent DNA ligase domain
| AseI frg. | C
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | DNA replication
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO6707 putative DNA ligase | 588 | 0.0e+00
|
| sgr | SGR_1024 putative DNA ligase | 523 | 0.0e+00
|
| sam | SAM23877_6361 DNA ligase C2 | 628 | 0.0e+00
|
| scab | SCAB13591 putative DNA ligase | 600 | 0.0e+00
|
| sace | SACE_1861 putative ATP-dependent DNA ligase | 326 | 4.0e-111
|
| nfar | nfa25600 ATP-dependent DNA ligase | 423 | 1.0e-119
|
| mtub | gi|15610867 DNA ligase [Mycobacterium tuberculosis H37Rv] | 432 | 1.3e-122
|
| bsub | BG13680 ligB, yoqV; ATP-dependent DNA ligase [EC:6.5.1.1] | 70 | 1.1e-13
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; bsub, Bacillus subtilis;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| DNA_ligase_A_M | 1 | ATP dependent DNA ligase domain | 11-197 | 133.8 | 5.7e-39
|
| DNA_ligase_A_C | 1 | ATP dependent DNA ligase C terminal region | 215-330 | 58.7 | 6.2e-16
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.2724 | Seems to have no N-terminal signal seq.
|