| ID | SAVERM_1845
| Type | CDS
|
| From | 2261159
| nt length | 870
|
| To | 2262028
| aa length | 289
|
| Gene |
| pI | 10.37
|
| Definition | putative LysR-family transcriptional regulator
| M.W (Da) | 31865
|
| Note | PF03466: LysR substrate binding domain
| AseI frg. | C
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | regulation
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO6555 LysR-type transcriptional regulator | 480 | 4.0e-174
|
| sgr | SGR_1124 putative LysR-family transcriptional regulator | 409 | 1.0e-145
|
| sam | SAM23877_6255 LysR family transcriptional regulator | 488 | 2.0e-177
|
| scab | SCAB16931 putative LysR-family transcriptional regulator | 493 | 8.0e-179
|
| nfar | nfa30710 transcriptional regulator | 255 | 3.6e-69
|
| ecoli | gi|16130224 NADH dehydrogenase transcriptional regulator, LysR family; modulates SprE(RssB) activity [Escherichia coli K12] | 132 | 2.1e-32
|
| paer | PA3995 [gene=PA3995] [prot=probable transcriptional regulator] [comment=PA3995] | 180 | 1.2e-46
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; nfar, Nocardia farcinica IFM 10152; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| LysR_substrate | 1 | LysR substrate binding domain | 87-278 | 108.4 | 2.9e-31
|
| HTH_1 | 1 | Bacterial regulatory helix-turn-helix protein, lysR family | 6-63 | 75.4 | 2.2e-21
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_028801803.1 | MULTISPECIES: LysR substrate-binding domain-containing prote...
| 1214 | 7.2e-167 |
| WP_191845083.1 | LysR substrate-binding domain-containing protein [Streptomyc...
| 1212 | 1.6e-166 |
|
| 1211 | 2.2e-166 |
| WP_055493824.1 | LysR substrate-binding domain-containing protein [Streptomyc...
| 1208 | 4.3e-166 |
| WP_168530966.1 | LysR substrate-binding domain-containing protein [Streptomyc...
| 1208 | 9.0e-166 |
| WP_103552591.1 | LysR substrate-binding domain-containing protein [Streptomyc...
| 1206 | 9.8e-166 |
| WP_033307555.1 | LysR substrate-binding domain-containing protein [Streptomyc...
| 1206 | 1.1e-165 |
| WP_153287795.1 | LysR substrate-binding domain-containing protein [Streptomyc...
| 1202 | 6.8e-165 |
| WP_107453834.1 | LysR substrate-binding domain-containing protein [Streptomyc...
| 1201 | 7.3e-165 |
| WP_164434520.1 | LysR substrate-binding domain-containing protein [Streptomyc...
| 1199 | 1.2e-164 |
PSORT result
| Localization | Certainty | PSORT said
|
| Not Clear | | Seems to have no N-terminal signal seq.
|