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IDSAVERM_1873 TypeCDS
From2300895 nt length795
To2300101 aa length264
Genesig19 pI5.68
Definitionputative RNA polymerase sigma factor M.W (Da)29941
Notesimilar to SCO6520, RNA polymerase alternative sigma factor, PF04545: Sigma-70, region 4 AseI frg.C
SignalP v.4.0Non-secretory protein | plot CategoryRNA initiation

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
coelSCO6520 putative RNA polymerase sigma factor4478.0e-162
sgrSGR_6446 putative RNA polymerase sigma factor3374.0e-118
samSAM23877_6227 RNA polymerase sigma factor SigF4362.0e-157
scabSCAB17181 putative RNA polymerase sigma factor4935.0e-180

*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r41Sigma-70, region 4209-25777.83e-22

Sigma70_r21Sigma-70 region 242-11060.87.3e-17

Sigma70_r31Sigma-70 region 3121-17441.87.8e-11

Sigma70_r4_21Sigma-70, region 4208-25040.51.5e-10

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_009304448.1 RNA polymerase sigma factor SigF [Streptomyces ipomoeae] >gb... 12902.4e-179
WP_152860124.1 RNA polymerase sigma factor SigF [Streptomyces acidicola] >g... 12902.7e-179
WP_200303095.1 RNA polymerase sigma factor SigF [Streptomyces adelaidensis] 12877.7e-179
WP_189191060.1 RNA polymerase sigma factor SigF [Streptomyces albiflavescen... 12842.0e-178
WP_131559876.1 RNA polymerase sigma factor SigF [Streptomyces sp. KM273126]... 12815.2e-178
WP_086754266.1 MULTISPECIES: RNA polymerase sigma factor SigF [Streptomyces... 12809.2e-178
WP_149826720.1 RNA polymerase sigma factor SigF [Streptomyces tailanensis] 12781.8e-177
WP_086801509.1 RNA polymerase sigma factor SigF [Streptomyces caniscabiei] 12771.9e-177
WP_189783177.1 RNA polymerase sigma factor SigF [Streptomyces capitiformica... 12781.9e-177
WP_134027995.1 RNA polymerase sigma factor SigF [Streptomyces bluensis] >db... 12763.2e-177

PSORT result

LocalizationCertaintyPSORT said
cytoplasm0.2817 Seems to have no N-terminal signal seq.