| ID | SAVERM_1892
| Type | CDS
|
| From | 2316291
| nt length | 1362
|
| To | 2314930
| aa length | 453
|
| Gene | ndh1
| pI | 8.33
|
| Definition | putative NADH dehydrogenase (complex I)
| M.W (Da) | 48493
|
| Note | PF00070: Pyridine nucleotide-disulphide oxidoreductase
| AseI frg. | C
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | membrane bioenergetics
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO6496 putative dehydrogenase | 743 | 0.0e+00
|
| sgr | SGR_6321 putative oxidoreductase | 320 | 7.0e-106
|
| sam | SAM23877_6200 putative dehydrogenase | 731 | 0.0e+00
|
| scab | SCAB17421 putative NADH dehydrogenase (complex I) | 739 | 0.0e+00
|
| nfar | nfa24230 oxidoreductase | 375 | 4.2e-105
|
| mtub | gi|15607533 PROBABLE MEMBRANE NADH DEHYDROGENASE NDHA [Mycobacterium tuberculosis H37Rv] | 162 | 3.3e-41
|
| cglu | gi|19552680 COG1252:NADH dehydrogenase, FAD-containing subunit [Corynebacterium glutamicum] | 137 | 1.0e-33
|
| bsub | BG12390 yumB; similar to NADH dehydrogenase [EC:1.6.99.3] | 159 | 2.4e-40
|
| ecoli | gi|16129072 respiratory NADH dehydrogenase [Escherichia coli K12] | 122 | 3.7e-29
|
| paer | PA4538 [gene=ndh] [prot=NADH dehydrogenase] [comment=PA4538] | 142 | 6.2e-35
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Pyr_redox_2 | 1 | Pyridine nucleotide-disulphide oxidoreductase | 5-329 | 216.2 | 5.1e-64
|
| Pyr_redox | 1 | Pyridine nucleotide-disulphide oxidoreductase | 165-247 | 45.6 | 7.3e-12
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_202497821.1 | NAD(P)/FAD-dependent oxidoreductase [Streptomyces sp. SID546...
| 2145 | 0.0e+00 |
| WP_237277264.1 | NAD(P)/FAD-dependent oxidoreductase [Streptomyces caniscabie...
| 1871 | 0.0e+00 |
| WP_064744190.1 | NAD(P)/FAD-dependent oxidoreductase [Streptomyces sp. FxanaA...
| 1863 | 0.0e+00 |
| GHE35819.1 | dehydrogenase [Streptomyces griseoaurantiacus]
| 1862 | 0.0e+00 |
| WP_220645516.1 | NAD(P)/FAD-dependent oxidoreductase [Streptomyces sp. MG28] ...
| 1858 | 0.0e+00 |
| WP_063819820.1 | NAD(P)/FAD-dependent oxidoreductase [Streptomyces caniscabie...
| 1858 | 0.0e+00 |
| SFN10681.1 | NADH dehydrogenase [Streptomyces sp. cf124]
| 1856 | 0.0e+00 |
| WP_234045602.1 | FAD-dependent oxidoreductase [Streptomyces adelaidensis]
| 1856 | 0.0e+00 |
|
| 1855 | 0.0e+00 |
| WP_234527781.1 | MULTISPECIES: NAD(P)/FAD-dependent oxidoreductase [unclassif...
| 1854 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| Not Clear | | Seems to have an uncleavable N-term signal seq
|