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IDSAVERM_1955 TypeCDS
From2392760 nt length258
To2392503 aa length85
Gene pI8.55
Definitionputative DNA-binding protein M.W (Da)9035
NotePF01381: Helix-turn-helix AseI frg.C
SignalP v.4.0Non-secretory protein | plot Categoryregulation

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
coelSCO6410 hypothetical protein1174.0e-37
sgrSGR_1236 putative DNA-binding protein1247.0e-40
samSAM23877_6026 hypothetical protein1352.0e-44
scabSCAB18051 putative DNA-binding protein1357.0e-44
saceSACE_3597 transcriptional regulator, XRE family1011.0e-30
nfarnfa31330 DNA-binding protein911.2e-20

*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

HTH_311Helix-turn-helix domain18-7649.92.9e-13

HTH_31Helix-turn-helix24-7634.12e-08

HTH_261Cro/C1-type HTH DNA-binding domain25-7625.41.3e-05

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_124438043.1 helix-turn-helix domain-containing protein [Streptomyces sp.... 3741.8e-45
WP_095748857.1 helix-turn-helix domain-containing protein [Streptomyces sp.... 3706.0e-45
WP_235460124.1 helix-turn-helix domain-containing protein [Streptomyces oli... 3681.4e-44
WP_164390865.1 helix-turn-helix domain-containing protein [Streptomyces har... 3644.6e-44
WP_189323336.1 helix-turn-helix domain-containing protein [Streptomyces fla... 3645.1e-44
WP_064536012.1 helix-turn-helix domain-containing protein [Streptomyces sp.... 3645.4e-44
MYR56079.1 helix-turn-helix domain-containing protein [Streptomyces sp. SID6... 3645.7e-44
WP_150944280.1 helix-turn-helix domain-containing protein [Streptomyces lut... 3646.1e-44
WP_057608304.1 helix-turn-helix domain-containing protein [Streptomyces sp.... 3636.5e-44
WP_152784669.1 helix-turn-helix domain-containing protein [Streptomyces phy... 3637.9e-44

PSORT result

LocalizationCertaintyPSORT said
cytoplasm0.3336 Seems to have no N-terminal signal seq.