| ID | SAVERM_1966
| Type | CDS
|
| From | 2404758
| nt length | 789
|
| To | 2403970
| aa length | 262
|
| Gene | xthA
| pI | 5.03
|
| Definition | putative exonuclease
| M.W (Da) | 28845
|
| Note | PF03372: Endonuclease/Exonuclease/phosphatase family
| AseI frg. | C
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | DNA modification & repair
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO6341 putative exonuclease | 483 | 5.0e-176
|
| sgr | SGR_1255 putative exonuclease | 392 | 2.0e-140
|
| sam | SAM23877_6019 putative exonuclease | 484 | 2.0e-176
|
| scab | SCAB18151 putative exonuclease | 489 | 2.0e-178
|
| sace | SACE_3393 AP endonuclease, family 1:exodeoxyribonuclease III xth | 343 | 1.0e-120
|
| nfar | nfa53030 xthA exonuclease | 275 | 2.3e-75
|
| mtub | gi|15607568 PROBABLE EXODEOXYRIBONUCLEASE III PROTEIN XTHA (EXONUCLEASE III) (EXO III) (AP ENDONUCLEASE VI) [Mycobacterium tuberculosis H37Rv] | 262 | 2.0e-71
|
| cglu | gi|19553934 COG0708:Exonuclease III [Corynebacterium glutamicum] | 250 | 5.5e-68
|
| paer | PA4172 [gene=PA4172] [prot=probable nuclease] [comment=PA4172] | 166 | 2.0e-42
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Exo_endo_phos | 1 | Endonuclease/Exonuclease/phosphatase family | 4-250 | 82.5 | 2.9e-23
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.1745 | Seems to have no N-terminal signal seq.
|