| ID | SAVERM_2021
| Type | CDS
|
| From | 2462482
| nt length | 369
|
| To | 2462114
| aa length | 122
|
| Gene |
| pI | 4.77
|
| Definition | putative DNA-binding protein
| M.W (Da) | 13216
|
| Note | PF02796: Helix-turn-helix domain of resolvase
| AseI frg. | C
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | regulation
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO6208 hypothetical protein | 222 | 2.0e-77
|
| sgr | SGR_1312 conserved hypothetical protein | 192 | 3.0e-65
|
| sam | SAM23877_5948 putative DNA-binding protein | 216 | 6.0e-75
|
| scab | SCAB18551 putative DNA-binding protein | 216 | 4.0e-75
|
| sace | SACE_6733 DNA-binding protein | 116 | 1.0e-35
|
| ecoli | gi|49176339 putative regulator [Escherichia coli K12] | 32 | 9.4e-03
|
| paer | PA3864 [gene=PA3864] [prot=hypothetical protein] [comment=PA3864] | 38 | 2.3e-04
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| HTH_22 | 1 | HTH domain | 56-117 | 74.3 | 5.5e-21
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
|
| 600 | 8.1e-79 |
| WP_189266908.1 | helix-turn-helix domain-containing protein [Streptomyces fus...
| 597 | 2.0e-78 |
| WP_067442292.1 | helix-turn-helix domain-containing protein [Streptomyces lin...
| 597 | 2.1e-78 |
| WP_043678874.1 | helix-turn-helix domain-containing protein [Streptomyces xyl...
| 596 | 3.2e-78 |
| WP_067032154.1 | helix-turn-helix domain-containing protein [Streptomyces dys...
| 594 | 7.7e-78 |
| WP_058922260.1 | helix-turn-helix domain-containing protein [Streptomyces sp....
| 593 | 9.4e-78 |
| WP_093498309.1 | helix-turn-helix domain-containing protein [Streptomyces sp....
| 593 | 9.7e-78 |
| WP_217548187.1 | helix-turn-helix domain-containing protein [Streptomyces sp....
| 593 | 9.7e-78 |
| WP_030614620.1 | helix-turn-helix domain-containing protein [Streptomyces ful...
| 592 | 1.3e-77 |
| WP_033279482.1 | helix-turn-helix domain-containing protein [Streptomyces sp....
| 591 | 2.1e-77 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.1441 | Seems to have no N-terminal signal seq.
|