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IDSAVERM_2108 TypeCDS
From2570591 nt length1677
To2572267 aa length558
Gene pI9.18
Definitionputative rhamnogalacturonase B precursor, secreted M.W (Da)58419
NoteTat substrate, PF09284: Rhamnogalacturonase B, N-terminal AseI frg.C
SignalP v.4.0Signal peptide | plot Categoryspecific pathways

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
scabSCAB19551 putative rhamnogalacturonase B precursor, secreted9040.0e+00

*scab, Streptomyces scabies 87.22;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

RhgB_N1Rhamnogalacturonan lyase B, N-terminal40-289302.52.2e-90

CBM-like1Polysaccharide lyase family 4, domain III388-556106.01.7e-30

fn3_31Polysaccharide lyase family 4, domain II296-37162.52.1e-17

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_189192516.1 polysaccharide lyase family protein [Streptomyces albiflaves... 22120.0e+00
WP_097251683.1 polysaccharide lyase family protein [Streptomyces sp. Ag109_... 21720.0e+00
WP_200713607.1 polysaccharide lyase family protein [Streptomyces sp. MBT62]... 21690.0e+00
WP_201048836.1 polysaccharide lyase family protein [Streptomyces sp. MBT53]... 21690.0e+00
WP_171144322.1 polysaccharide lyase family protein [Streptomyces sp. S3(202... 21650.0e+00
WP_093629889.1 polysaccharide lyase family protein [Streptomyces sp. 3213.3... 21640.0e+00
WP_217566053.1 polysaccharide lyase family protein [Streptomyces sp. GbtcB7... 21640.0e+00
WP_189289721.1 polysaccharide lyase family protein [Streptomyces fumigatisc... 21610.0e+00
WP_019071534.1 polysaccharide lyase family protein [Streptomyces hokutonens... 21610.0e+00
WP_033281558.1 polysaccharide lyase family protein [Streptomyces sp. NRRL F... 21560.0e+00

PSORT result

LocalizationCertaintyPSORT said
Not Clear Seems to have no N-terminal signal seq.