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IDSAVERM_213 TypeCDS
From248741 nt length603
To248139 aa length200
Genesig60 pI6.97
Definitionputative RNA polymerase ECF-subfamily sigma factor M.W (Da)22230
NotePF08281: Sigma-70, region 4 AseI frg.A
SignalP v.4.0Non-secretory protein | plot CategoryRNA initiation

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
paerPA0675 [gene=PA0675] [prot=probable sigma-70 factor, ECF subfamily] [comment=PA0675]413.8e-05

*paer, Pseudomonas aeruginosa;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r4_21Sigma-70, region 4131-18148.16.1e-13

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_181411777.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 8874.9e-120
WP_145872445.1 sigma-70 family RNA polymerase sigma factor [Streptomyces ca... 8851.0e-119
WP_037680676.1 sigma-70 family RNA polymerase sigma factor [Streptomyces gr... 8806.8e-119
WP_217235557.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 8798.3e-119
WP_093780622.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 8321.1e-111
BAK19816.1 putative RNA polymerase ECF-subfamily sigma factor [Streptomyces... 8293.3e-111
WP_234543607.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sh... 8276.6e-111
WP_060887535.1 sigma-70 family RNA polymerase sigma factor [Streptomyces ca... 8251.3e-110
WP_189857942.1 sigma-70 family RNA polymerase sigma factor [Streptomyces po... 8232.7e-110
WP_004993119.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 8191.1e-109

PSORT result

LocalizationCertaintyPSORT said
cytoplasm0.3467 Seems to have no N-terminal signal seq.