| ID | SAVERM_2229
| Type | CDS
|
| From | 2708486
| nt length | 672
|
| To | 2709157
| aa length | 223
|
| Gene |
| pI | 4.44
|
| Definition | hypothetical protein
| M.W (Da) | 23695
|
| Note | PF11452: Protein of unknown function (DUF3000)
| AseI frg. | O
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | similar to unknown proteins
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO6030 hypothetical protein | 354 | 3.0e-126
|
| sgr | SGR_1474 conserved hypothetical protein | 317 | 6.0e-112
|
| sam | SAM23877_5748 hypothetical protein | 339 | 1.0e-120
|
| scab | SCAB20871 hypothetical protein | 358 | 2.0e-128
|
| sace | SACE_1835 hypothetical protein | 135 | 1.0e-40
|
| nfar | nfa37390 hypothetical protein | 156 | 1.2e-39
|
| mtub | gi|15609817 hypothetical protein Rv2680 [Mycobacterium tuberculosis H37Rv] | 171 | 4.8e-44
|
| cglu | gi|19553104 hypothetical protein, predicted by GeneMark hmm [Corynebacterium glutamicum] | 153 | 5.6e-39
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| DUF3000 | 1 | Protein of unknown function (DUF3000) | 30-203 | 240.2 | 8.8e-72
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| NEB34292.1 | DUF3000 domain-containing protein [Streptomyces sp. SID14446]
| 952 | 3.3e-129 |
| OQQ18876.1 | hypothetical protein B0675_18570 [Streptomyces sp. M41(2017)]
| 951 | 4.3e-129 |
| WP_189188362.1 | DUF3000 domain-containing protein [Streptomyces albiflavesce...
| 950 | 8.1e-129 |
|
| 946 | 3.1e-128 |
| WP_079065363.1 | DUF3000 domain-containing protein [Streptomyces olivochromog...
| 941 | 1.4e-127 |
| NMI61639.1 | DUF3000 domain-containing protein [Streptomyces sp. RLA2-12] >gb
| 937 | 5.6e-127 |
| QDN81071.1 | DUF3000 domain-containing protein [Streptomyces sp. S1A1-7] >gb
| 937 | 6.4e-127 |
| WP_151468607.1 | DUF3000 domain-containing protein [Streptomyces triticiradic...
| 937 | 7.2e-127 |
| WP_103548111.1 | DUF3000 domain-containing protein [Streptomyces populi] >gb
| 937 | 7.9e-127 |
| QFZ73728.1 | DUF3000 family protein [Streptomyces fagopyri]
| 936 | 8.0e-127 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.3748 | Seems to have no N-terminal signal seq.
|