| ID | SAVERM_2396
| Type | CDS
|
| From | 2924504
| nt length | 2556
|
| To | 2921949
| aa length | 851
|
| Gene | kdpD
| pI | 5.58
|
| Definition | putative two-component system sensor kinase for high-affinity potassium transport system
| M.W (Da) | 91083
|
| Note | PF02702: Osmosensitive K+ channel His kinase sensor domain
| AseI frg. | M
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | sensors
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO5871 putative turgor pressure sensor KdpD | 1408 | 0.0e+00
|
| sgr | SGR_1661 putative two-component system sensor kinase | 1403 | 0.0e+00
|
| sam | SAM23877_5571 Sensor protein KdpD | 1409 | 0.0e+00
|
| scab | SCAB24001 putative two-component system sensor kinase for high-affinity potassium transport system | 1340 | 0.0e+00
|
| sace | SACE_6086 sensor histidine kinase | 790 | 0.0e+00
|
| nfar | nfa15690 kdpD two-component system sensor kinase | 768 | 0.0e+00
|
| mtub | gi|15608168 PROBABLE SENSOR PROTEIN KDPD [Mycobacterium tuberculosis H37Rv] | 793 | 0.0e+00
|
| ecoli | gi|16128671 sensor for high-affinity potassium transport system [Escherichia coli K12] | 392 | 3.9e-110
|
| paer | PA1636 [gene=kdpD] [prot=two-component sensor KdpD] [comment=PA1636] | 413 | 3.0e-116
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| KdpD | 1 | Osmosensitive K+ channel His kinase sensor domain | 3-211 | 333.1 | 5.3e-100
|
| DUF4118 | 1 | Domain of unknown function (DUF4118) | 385-486 | 83.4 | 7.9e-24
|
| HATPase_c | 1 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | 722-827 | 65.2 | 6.7e-18
|
| HisKA | 1 | His Kinase A (phospho-acceptor) domain | 614-681 | 62.5 | 2.6e-17
|
| Usp | 1 | Universal stress protein family | 232-346 | 29.3 | 9.9e-07
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_168496476.1 | sensor histidine kinase KdpD [Streptomyces sp. RLB1-33] >gb
| 3404 | 0.0e+00 |
| WP_189188276.1 | sensor histidine kinase KdpD [Streptomyces albiflavescens] >...
| 3403 | 0.0e+00 |
| WP_096240092.1 | sensor histidine kinase KdpD [Streptomyces olivochromogenes]...
| 3403 | 0.0e+00 |
| QIY98772.1 | sensor histidine kinase KdpD [Streptomyces sp. S1D4-11]
| 3399 | 0.0e+00 |
| WP_190172396.1 | sensor histidine kinase KdpD [Streptomyces mirabilis] >dbj
| 3399 | 0.0e+00 |
| WP_212726812.1 | sensor histidine kinase KdpD [Streptomyces mirabilis] >gb
| 3399 | 0.0e+00 |
| WP_095937144.1 | sensor histidine kinase KdpD [Streptomyces sp. Tue6028] >gb
| 3398 | 0.0e+00 |
| WP_217566193.1 | sensor histidine kinase KdpD [Streptomyces sp. GbtcB7]
| 3396 | 0.0e+00 |
| WP_095852173.1 | DUF4118 domain-containing protein [Streptomyces sp. Ag82_O1-...
| 3391 | 0.0e+00 |
| WP_075030586.1 | sensor histidine kinase KdpD [Streptomyces mirabilis] >emb
| 3385 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.5267 | Seems to have no N-terminal signal seq.
|