| ID | SAVERM_2424
| Type | CDS
|
| From | 2956521
| nt length | 1086
|
| To | 2955436
| aa length | 361
|
| Gene | cobW
| pI | 4.77
|
| Definition | putative cobalamin synthesis protein
| M.W (Da) | 39377
|
| Note | cobalamin biosynthesis, PF02492: CobW/HypB/UreG, nucleotide-binding domain
| AseI frg. | Q
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | metabolism of coenzymes & prosthetic groups
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO5835 hypothetical protein | 536 | 0.0e+00
|
| sgr | SGR_1690 putative ATP/GTP-binding protein | 432 | 3.0e-152
|
| sam | SAM23877_5540 ATP/GTP-binding protein | 553 | 0.0e+00
|
| scab | SCAB24301 putative cobalamin synthesis protein | 536 | 0.0e+00
|
| sace | SACE_3297 cobalamin synthesis protein | 346 | 3.0e-119
|
| nfar | nfa43200 cobalamin synthesis protein | 313 | 1.9e-86
|
| cglu | gi|19551922 COG0523:Putative GTPases (G3E family) [Corynebacterium glutamicum] | 105 | 2.5e-24
|
| bsub | BG12021 yciC; probable zinc transport system permease protein | 109 | 2.2e-25
|
| ecoli | gi|49176496 putative synthesis protein [Escherichia coli K12] | 70 | 1.3e-13
|
| paer | PA2945 [gene=PA2945] [prot=conserved hypothetical protein] [comment=PA2945] | 119 | 5.6e-28
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| cobW | 1 | CobW/HypB/UreG, nucleotide-binding domain | 11-184 | 149.6 | 5.9e-44
|
| CobW_C | 1 | Cobalamin synthesis protein cobW C-terminal domain | 233-322 | 78.6 | 2.4e-22
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| outside | 0.3000 | Seems to have a cleavable N-term signal seq.
|