| ID | SAVERM_2453
| Type | CDS
|
| From | 2992350
| nt length | 702
|
| To | 2991649
| aa length | 233
|
| Gene | rnhB
| pI | 9.06
|
| Definition | putative ribonuclease HII
| M.W (Da) | 25206
|
| Note | PF01351: Ribonuclease HII
| AseI frg. | Q
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | DNA replication
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO5812 probable ribonuclease HII | 415 | 3.0e-150
|
| sgr | SGR_1709 putative ribonuclease HII | 341 | 9.0e-121
|
| sam | SAM23877_5515 Ribonuclease HII | 400 | 3.0e-144
|
| scab | SCAB24551 putative ribonuclease HII | 402 | 4.0e-145
|
| sace | SACE_6047 ribonuclease HII | 97 | 3.0e-25
|
| nfar | nfa41450 rnhB RNase HII | 110 | 1.1e-25
|
| mtub | gi|15610039 ribonuclease HII [Mycobacterium tuberculosis H37Rv] | 119 | 2.3e-28
|
| cglu | gi|19553236 COG0164:Ribonuclease HII [Corynebacterium glutamicum] | 98 | 3.0e-22
|
| bsub | BG12666 rnhB, rnh; Mn2+-dependent ribonuclease HII [EC:3.1.26.4] | 112 | 1.4e-26
|
| ecoli | gi|16128176 ribonuclease HII [Escherichia coli K12] | 137 | 4.7e-34
|
| paer | PA3642 [gene=rnhB] [prot=ribonuclease HII] [comment=PA3642] | 138 | 3.8e-34
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| RNase_HII | 1 | Ribonuclease HII | 24-200 | 121.8 | 3e-35
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.1558 | Seems to have no N-terminal signal seq.
|