| ID | SAVERM_2473
| Type | CDS
|
| From | 3022638
| nt length | 870
|
| To | 3021769
| aa length | 289
|
| Gene | dapF1
| pI | 4.55
|
| Definition | putative diaminopimelate epimerase
| M.W (Da) | 30078
|
| Note | PF01678: Diaminopimelate epimerase
| AseI frg. | Q
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | metabolism of amino acids & related molecules
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO5793 diaminopimelate epimerase | 514 | 0.0e+00
|
| sgr | SGR_1727 putative diaminopimelate epimerase | 471 | 2.0e-170
|
| sam | SAM23877_5496 Diaminopimelate epimerase | 464 | 6.0e-168
|
| scab | SCAB24751 putative diaminopimelate epimerase | 492 | 8.0e-179
|
| sace | SACE_1753 diaminopimelate epimerase | 253 | 2.0e-84
|
| nfar | nfa38290 dapF diaminopimelate epimerase | 211 | 4.6e-56
|
| mtub | gi|15609863 diaminopimelate epimerase [Mycobacterium tuberculosis H37Rv] | 205 | 3.3e-54
|
| cglu | gi|19553148 COG0253:Diaminopimelate epimerase [Corynebacterium glutamicum] | 197 | 6.3e-52
|
| paer | PA5278 [gene=dapF] [prot=diaminopimelate epimerase] [comment=PA5278] | 144 | 1.2e-35
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| DAP_epimerase | 2 | Diaminopimelate epimerase | 7-133, 153-274 | 224.0 | 3.6e-67
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.2123 | Seems to have no N-terminal signal seq.
|