| ID | SAVERM_2549
| Type | CDS
|
| From | 3128439
| nt length | 474
|
| To | 3127966
| aa length | 157
|
| Gene | rbfA
| pI | 4.48
|
| Definition | putative ribosome-binding factor
| M.W (Da) | 16544
|
| Note | PF02033: Ribosome-binding factor A
| AseI frg. | V
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | initiation
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO5708 putative ribosome-binding factor | 252 | 3.0e-88
|
| sgr | SGR_1809 putative ribosome-binding factor | 196 | 7.0e-66
|
| sam | SAM23877_5429 Ribosome-binding factor A | 254 | 7.0e-89
|
| scab | SCAB25331 putative ribosome-binding factor | 239 | 4.0e-83
|
| sace | SACE_5924 ribosome-binding factor A | 144 | 1.0e-45
|
| nfar | nfa40650 rbfA ribosome-binding factor A | 153 | 5.8e-39
|
| mtub | gi|15609975 ribosome-binding factor A [Mycobacterium tuberculosis H37Rv] | 139 | 1.2e-34
|
| cglu | gi|19553188 COG0858:Ribosome-binding factor A [Corynebacterium glutamicum] | 127 | 3.2e-31
|
| bsub | BG10270 rbfA, ymxE, ylxO; ribosome-binding factor A | 76 | 6.3e-16
|
| ecoli | gi|16131059 ribosome-binding factor A [Escherichia coli K12] | 63 | 6.2e-12
|
| paer | PA4743 [gene=rbfA] [prot=ribosome-binding factor A] [comment=PA4743] | 63 | 6.3e-12
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| RBFA | 1 | Ribosome-binding factor A | 6-110 | 89.9 | 1.2e-25
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_202497923.1 | 30S ribosome-binding factor RbfA [Streptomyces sp. SID5469]
| 703 | 1.7e-93 |
| NGO15002.1 | 30S ribosome-binding factor RbfA [Streptomyces scabichelini]
| 682 | 3.6e-90 |
| WP_189845206.1 | MULTISPECIES: 30S ribosome-binding factor RbfA [Streptomyces...
| 678 | 1.1e-89 |
| WP_054232827.1 | MULTISPECIES: 30S ribosome-binding factor RbfA [Streptomyces...
| 676 | 2.6e-89 |
| WP_055616320.1 | 30S ribosome-binding factor RbfA [Streptomyces phaeochromoge...
| 675 | 3.6e-89 |
| WP_138050553.1 | 30S ribosome-binding factor RbfA [Streptomyces montanus] >lc...
| 674 | 4.6e-89 |
| WP_143640750.1 | 30S ribosome-binding factor RbfA [Streptomyces sp. IB201691-...
| 674 | 5.2e-89 |
| WP_033326869.1 | MULTISPECIES: 30S ribosome-binding factor RbfA [Streptomyces...
| 673 | 7.6e-89 |
| MPY37836.1 | 30S ribosome-binding factor RbfA [Streptomyces adustus]
| 671 | 1.6e-88 |
| WP_151481653.1 | 30S ribosome-binding factor RbfA [Streptomyces albicerus]
| 670 | 2.0e-88 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.2898 | Seems to have no N-terminal signal seq.
|