| ID | SAVERM_2553
| Type | CDS
|
| From | 3133602
| nt length | 987
|
| To | 3132616
| aa length | 328
|
| Gene | nusA
| pI | 5.34
|
| Definition | putative transcriptional termination/antitermination factor
| M.W (Da) | 35808
|
| Note | PF00575: S1 RNA binding domain
| AseI frg. | V
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | DNA termination
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO5704 putative transcriptional termination/antitermination factor | 634 | 0.0e+00
|
| sgr | SGR_1813 putative transcriptional termination/antitermination factor | 575 | 0.0e+00
|
| sam | SAM23877_5425 Transcription termination/antitermination protein NusA | 637 | 0.0e+00
|
| scab | SCAB25371 putative transcriptional termination/antitermination factor | 640 | 0.0e+00
|
| sace | SACE_5927 putative transcriptional termination/antitermination factor | 425 | 9.0e-151
|
| nfar | nfa40680 nusA transcriptional termination/antitermination factor | 402 | 2.1e-113
|
| mtub | gi|15609978 transcription elongation factor NusA [Mycobacterium tuberculosis H37Rv] | 397 | 5.3e-112
|
| cglu | gi|19553191 COG0195:Transcription elongation factor [Corynebacterium glutamicum] | 311 | 3.5e-86
|
| bsub | BG10265 nusA; transcription termination factor | 316 | 1.0e-87
|
| ecoli | gi|16131061 transcription elongation factor NusA [Escherichia coli K12] | 191 | 5.7e-50
|
| paer | PA4745 [gene=nusA] [prot=N utilization substance protein A] [comment=PA4745] | 209 | 2.8e-55
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| KH_5 | 1 | NusA-like KH domain | 210-278 | 93.2 | 7.3e-27
|
| NusA_N | 2 | NusA N-terminal domain | 6-62, 64-103 | 71.7 | 5.9e-20
|
| S1 | 1 | S1 RNA binding domain | 114-176 | 23.3 | 5.6e-05
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_189937114.1 | transcription termination factor NusA [Streptomyces aurantio...
| 1681 | 0.0e+00 |
| WP_151481649.1 | transcription termination factor NusA [Streptomyces albiceru...
| 1678 | 0.0e+00 |
| WP_067371251.1 | MULTISPECIES: transcription termination factor NusA [Strepto...
| 1676 | 0.0e+00 |
| WP_202497924.1 | transcription termination factor NusA [Streptomyces sp. SID5...
| 1675 | 0.0e+00 |
| WP_054232831.1 | MULTISPECIES: transcription termination factor NusA [unclass...
| 1674 | 0.0e+00 |
| WP_030667106.1 | transcription termination factor NusA [Streptomyces cellulos...
| 1674 | 0.0e+00 |
| QIY98606.1 | transcription termination/antitermination protein NusA [Streptomy...
| 1672 | 0.0e+00 |
| WP_064535543.1 | transcription termination factor NusA [Streptomyces sp. SAT1...
| 1671 | 0.0e+00 |
| WP_030958814.1 | MULTISPECIES: transcription termination factor NusA [Strepto...
| 1670 | 0.0e+00 |
| MYR61181.1 | transcription termination/antitermination protein NusA [Streptomy...
| 1670 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.1447 | Seems to have no N-terminal signal seq.
|