| ID | SAVERM_2563
| Type | CDS
|
| From | 3144267
| nt length | 1185
|
| To | 3143083
| aa length | 394
|
| Gene | dxr
| pI | 5.23
|
| Definition | putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase
| M.W (Da) | 41285
|
| Note | ispC, MEP pathway, EC 1.1.1.267
| AseI frg. | V
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | specific pathways
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO5694 1-deoxy-D-xylulose 5-phosphate reductoisomerase | 687 | 0.0e+00
|
| sgr | SGR_1823 putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase | 676 | 0.0e+00
|
| sam | SAM23877_5415 1-deoxy-D-xylulose 5-phosphate reductoisomerase | 702 | 0.0e+00
|
| scab | SCAB25481 putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase | 711 | 0.0e+00
|
| sace | SACE_5994 1-deoxy-D-xylulose-5-phosphate reductoisomerase | 423 | 4.0e-148
|
| nfar | nfa41200 dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase | 387 | 9.0e-109
|
| mtub | gi|57117032 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Mycobacterium tuberculosis H37Rv] | 380 | 8.4e-107
|
| cglu | gi|19553219 COG0743:1-deoxy-D-xylulose 5-phosphate reductoisomerase [Corynebacterium glutamicum] | 377 | 6.5e-106
|
| bsub | BG13409 dxr, yluB; 1-deoxy-D-xylulose 5-phosphate reductoisomerase [EC:1.1.1.-] | 259 | 2.5e-70
|
| ecoli | gi|16128166 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Escherichia coli K12] | 244 | 9.3e-66
|
| paer | PA3650 [gene=dxr] [prot=1-deoxy-d-xylulose 5-phosphate reductoisomerase] [comment=PA3650] | 249 | 4.0e-67
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| DXP_reductoisom | 1 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase | 1-132 | 133.7 | 5.5e-39
|
| DXP_redisom_C | 1 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal | 144-227 | 122.8 | 4.7e-36
|
| DXPR_C | 1 | DXP reductoisomerase C-terminal domain | 261-378 | 107.9 | 3.2e-31
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_189189063.1 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase [Streptomyce...
| 1860 | 0.0e+00 |
| WP_099502572.1 | MULTISPECIES: 1-deoxy-D-xylulose-5-phosphate reductoisomeras...
| 1845 | 0.0e+00 |
| WP_164371076.1 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase [Streptomyce...
| 1845 | 0.0e+00 |
| WP_067371237.1 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase [Streptomyce...
| 1841 | 0.0e+00 |
| WP_097286445.1 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase [Streptomyce...
| 1840 | 0.0e+00 |
| WP_168496182.1 | MULTISPECIES: 1-deoxy-D-xylulose-5-phosphate reductoisomeras...
| 1840 | 0.0e+00 |
| GAX51503.1 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Streptomyces ol...
| 1838 | 0.0e+00 |
| SOE30862.1 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Streptomyces sp...
| 1838 | 0.0e+00 |
| WP_081219715.1 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase [Streptomyce...
| 1837 | 0.0e+00 |
| WP_054235299.1 | MULTISPECIES: 1-deoxy-D-xylulose-5-phosphate reductoisomeras...
| 1836 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.0204 | Seems to have no N-terminal signal seq.
|