| ID | SAVERM_2583
| Type | CDS
|
| From | 3175462
| nt length | 1335
|
| To | 3176796
| aa length | 444
|
| Gene | gabT
| pI | 5.19
|
| Definition | putative 4-aminobutyrate aminotransferase
| M.W (Da) | 46470
|
| Note | PF00202: Aminotransferase class-III
| AseI frg. | J
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | metabolism of amino acids & related molecules
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO5676 putative 4-aminobutyrate aminotransferase | 807 | 0.0e+00
|
| sgr | SGR_1829 putative 4-aminobutyrate aminotransferase | 772 | 0.0e+00
|
| sam | SAM23877_5401 4-aminobutyrate aminotransferase | 825 | 0.0e+00
|
| scab | SCAB25691 putative 4-aminobutyrate aminotransferase | 747 | 0.0e+00
|
| sace | SACE_6022 4-aminobutyrate aminotransferase, PLP-dependent | 601 | 0.0e+00
|
| mtub | gi|15609726 4-aminobutyrate aminotransferase [Mycobacterium tuberculosis H37Rv] | 541 | 4.3e-155
|
| cglu | gi|19551722 COG0160:PLP-dependent aminotransferases [Corynebacterium glutamicum] | 508 | 2.2e-145
|
| bsub | BG12043 gabT, ycnG; 4-aminobutyrate aminotransferase [EC:2.6.1.19] | 384 | 5.9e-108
|
| ecoli | gi|16130576 4-aminobutyrate aminotransferase [Escherichia coli K12] | 348 | 3.1e-97
|
| paer | PA0266 [gene=gabT] [prot=4-aminobutyrate aminotransferase] [comment=PA0266] | 336 | 2.9e-93
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Aminotran_3 | 1 | Aminotransferase class-III | 36-440 | 406.0 | 1.3e-121
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_099920410.1 | 4-aminobutyrate--2-oxoglutarate transaminase [Streptomyces m...
| 2108 | 0.0e+00 |
| WP_075031268.1 | 4-aminobutyrate--2-oxoglutarate transaminase [Streptomyces m...
| 2107 | 0.0e+00 |
| WP_060901190.1 | MULTISPECIES: 4-aminobutyrate--2-oxoglutarate transaminase [...
| 2102 | 0.0e+00 |
| WP_217572754.1 | 4-aminobutyrate--2-oxoglutarate transaminase [Streptomyces s...
| 2101 | 0.0e+00 |
| WP_168530469.1 | 4-aminobutyrate--2-oxoglutarate transaminase [Streptomyces s...
| 2100 | 0.0e+00 |
| WP_189189045.1 | 4-aminobutyrate--2-oxoglutarate transaminase [Streptomyces a...
| 2099 | 0.0e+00 |
| WP_153288293.1 | 4-aminobutyrate--2-oxoglutarate transaminase [Streptomyces f...
| 2098 | 0.0e+00 |
| WP_097286432.1 | 4-aminobutyrate--2-oxoglutarate transaminase [Streptomyces s...
| 2098 | 0.0e+00 |
| WP_148010724.1 | 4-aminobutyrate--2-oxoglutarate transaminase [Streptomyces s...
| 2093 | 0.0e+00 |
| WP_095852323.1 | MULTISPECIES: 4-aminobutyrate--2-oxoglutarate transaminase [...
| 2093 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.1171 | Seems to have no N-terminal signal seq.
|