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IDSAVERM_2648 TypeCDS
From3246002 nt length1551
To3244452 aa length516
Geneffh pI9.49
Definitionputative signal recognition particle, subunit SRP54 M.W (Da)55546
NotePF00448: SRP54-type protein, GTPase domain AseI frg.J
SignalP v.4.0Non-secretory protein | plot Categoryprotein secretion

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
coelSCO5586 signal recognition particle protein8760.0e+00
sgrSGR_1892 putative signal recognition particle8570.0e+00
samSAM23877_5342 Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)8790.0e+00
scabSCAB26231 putative signal recognition particle, subunit SRP548840.0e+00
saceSACE_6057 signal recognition particle GTPase6520.0e+00
nfarnfa41600 ffh signal recognition particle protein6022.4e-173
mtubgi|15610053 PROBABLE SIGNAL RECOGNITION PARTICLE PROTEIN FFH (FIFTY-FOUR HOMOLOG) (SRP PROTEIN) [Mycobacterium tuberculosis H37Rv]5907.4e-170
cglugi|19553259 COG0541:Signal recognition particle GTPase [Corynebacterium glutamicum]5921.8e-170
bsubBG10830 ffh; signal recognition particle protein (fifty-four homolog)4246.1e-120
ecoligi|16130531 4.5S-RNP protein, GTP-binding export factor, part of signal recognition particle with 4.5 RNA [Escherichia coli K12]4361.8e-123
paerPA3746 [gene=ffh] [prot=signal recognition particle protein Ffh] [comment=PA3746]4101.9e-115

*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

SRP541SRP54-type protein, GTPase domain100-297235.82.9e-70

SRP_SPB1Signal peptide binding domain333-430104.82.7e-30

SRP54_N1SRP54-type protein, helical bundle domain5-8278.53.2e-22

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_202497941.1 signal recognition particle protein [Streptomyces sp. SID546... 24340.0e+00
WP_189188982.1 signal recognition particle protein [Streptomyces albiflaves... 23860.0e+00
WP_019068759.1 signal recognition particle protein [Streptomyces hokutonens... 23680.0e+00
WP_093629379.1 signal recognition particle protein [Streptomyces sp. 3213.3... 23660.0e+00
WP_033282658.1 signal recognition particle protein [Streptomyces sp. NRRL F... 23640.0e+00
23470.0e+00
WP_019058693.1 signal recognition particle protein [Streptomyces prunicolor... 23450.0e+00
M... 23440.0e+00
WP_043680498.1 signal recognition particle protein [Streptomyces xylophagus... 23410.0e+00
WP_171399663.1 signal recognition particle protein [Streptomyces asoensis] ... 23400.0e+00

PSORT result

LocalizationCertaintyPSORT said
membrane0.1107 Seems to have no N-terminal signal seq.