| ID | SAVERM_2687
| Type | CDS
|
| From | 3293189
| nt length | 717
|
| To | 3293905
| aa length | 238
|
| Gene |
| pI | 11.75
|
| Definition | putative IclR-family transcriptional regulator
| M.W (Da) | 24961
|
| Note | PF01614: Bacterial transcriptional regulator
| AseI frg. | J
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | regulation
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO5552 putative transcriptional regulator | 458 | 5.0e-167
|
| sgr | SGR_1930 putative IclR-family transcriptional regulator | 458 | 6.0e-167
|
| sam | SAM23877_5304 IclR family transcriptional regulator | 461 | 3.0e-168
|
| scab | SCAB26621 putative IclR-family transcriptional regulator | 377 | 1.0e-135
|
| sace | SACE_6145 transcriptional regulator, IclR family | 184 | 2.0e-59
|
| nfar | nfa42130 transcriptional regulator | 226 | 1.8e-60
|
| mtub | gi|15610126 PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium tuberculosis H37Rv] | 214 | 4.1e-57
|
| cglu | gi|19552533 COG1414:Transcriptional regulator [Corynebacterium glutamicum] | 176 | 6.8e-46
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| IclR | 1 | Bacterial transcriptional regulator | 125-232 | 61.8 | 5e-17
|
| HTH_IclR | 1 | IclR helix-turn-helix domain | 10-57 | 37.4 | 1.5e-09
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_100595026.1 | MULTISPECIES: IclR family transcriptional regulator NdgR [un...
| 1119 | 3.6e-154 |
| WP_135330737.1 | IclR family transcriptional regulator NdgR [Streptomyces sp....
| 1117 | 6.9e-154 |
| WP_026245909.1 | MULTISPECIES: IclR family transcriptional regulator NdgR [un...
| 1117 | 6.9e-154 |
| WP_037625007.1 | MULTISPECIES: IclR family transcriptional regulator NdgR [St...
| 1116 | 9.7e-154 |
| WP_164306311.1 | IclR family transcriptional regulator NdgR [Streptomyces sp....
| 1116 | 9.7e-154 |
| WP_119295157.1 | MULTISPECIES: IclR family transcriptional regulator NdgR [St...
| 1116 | 9.7e-154 |
| WP_031138086.1 | MULTISPECIES: IclR family transcriptional regulator NdgR [St...
| 1116 | 1.3e-153 |
| WP_127829978.1 | IclR family transcriptional regulator NdgR [Streptomyces sp....
| 1116 | 1.3e-153 |
| WP_055564460.1 | MULTISPECIES: IclR family transcriptional regulator NdgR [St...
| 1114 | 2.5e-153 |
| WP_187742582.1 | MULTISPECIES: IclR family transcriptional regulator NdgR [St...
| 1114 | 2.5e-153 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.0224 | Seems to have no N-terminal signal seq.
|