| ID | SAVERM_2743
| Type | CDS
|
| From | 3370576
| nt length | 1518
|
| To | 3369059
| aa length | 505
|
| Gene | gatB
| pI | 4.91
|
| Definition | putative aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B
| M.W (Da) | 54514
|
| Note | PF02934: PET112 family, N terminal region
| AseI frg. | J
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | aminoacyl-tRNA-synthetase
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO5501 SC8D9.13 probable Glu-tRNAGln amidotransferase subunit B | 939 | 0.0e+00
|
| sgr | SGR_2016 putative glutamyl-tRNA amidotransferase subunit B | 880 | 0.0e+00
|
| sam | SAM23877_5250 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B | 919 | 0.0e+00
|
| scab | SCAB27201 putative aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B | 924 | 0.0e+00
|
| sace | SACE_6171 glutamyl-tRNA(Gln) amidotransferase subunit B | 725 | 0.0e+00
|
| nfar | nfa42380 gatB glutamyl-tRNA amidotransferase subunit B | 691 | 0.0e+00
|
| mtub | gi|15610146 aspartyl/glutamyl-tRNA amidotransferase subunit B [Mycobacterium tuberculosis H37Rv] | 679 | 0.0e+00
|
| cglu | gi|19552480 COG0064:Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) [Corynebacterium glutamicum] | 635 | 0.0e+00
|
| bsub | BG12840 gatB, yerN; glutamyl-tRNA (Gln) amidotransferase subunit B [EC:6.3.5.-] | 397 | 1.0e-111
|
| paer | PA4484 [gene=gatB] [prot=Glu-tRNA(Gln) amidotransferase subunit B] [comment=PA4484] | 368 | 6.1e-103
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| GatB_N | 1 | GatB/GatE catalytic domain | 21-315 | 342.9 | 1.2e-102
|
| GatB_Yqey | 1 | GatB domain | 357-500 | 142.8 | 6.5e-42
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_168495790.1 | MULTISPECIES: Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase s...
| 2467 | 0.0e+00 |
| QIY98415.1 | Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB [Strept...
| 2461 | 0.0e+00 |
| WP_075031594.1 | Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB [S...
| 2457 | 0.0e+00 |
| WP_081219571.1 | Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB [S...
| 2455 | 0.0e+00 |
| WP_097224703.1 | Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB [S...
| 2454 | 0.0e+00 |
| WP_168530358.1 | Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB [S...
| 2450 | 0.0e+00 |
| WP_148010592.1 | Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB [S...
| 2449 | 0.0e+00 |
| NEB27571.1 | Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB [Strept...
| 2449 | 0.0e+00 |
| WP_060901245.1 | MULTISPECIES: Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase s...
| 2448 | 0.0e+00 |
| WP_028805280.1 | Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB [S...
| 2448 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.2744 | Seems to have no N-terminal signal seq.
|