| ID | SAVERM_2815
| Type | CDS
|
| From | 3458798
| nt length | 1413
|
| To | 3457386
| aa length | 470
|
| Gene | dctA
| pI | 7.7
|
| Definition | putative sodium:dicarboxylate symporter
| M.W (Da) | 49153
|
| Note | PF00375: Sodium:dicarboxylate symporter family
| AseI frg. | K
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | transport / binding proteins & lipoproteins
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO5436 putative sodium:dicarboxylate symporter | 701 | 0.0e+00
|
| sgr | SGR_2106 putative sodium:dicarboxylate symporter | 677 | 0.0e+00
|
| sam | SAM23877_5177 C4-dicarboxylate transport protein | 696 | 0.0e+00
|
| scab | SCAB28061 putative sodium:dicarboxylate symporter | 715 | 0.0e+00
|
| sace | SACE_5768 putative sodium:dicarboxylate symporter | 647 | 0.0e+00
|
| nfar | nfa46330 sodium:dicarboxylate symporter | 575 | 3.8e-165
|
| mtub | gi|15609580 PROBABLE C4-DICARBOXYLATE-TRANSPORT TRANSMEMBRANE PROTEIN DCTA [Mycobacterium tuberculosis H37Rv] | 523 | 9.9e-150
|
| cglu | gi|19553791 COG1301:Na+/H+-dicarboxylate symporters [Corynebacterium glutamicum] | 525 | 2.4e-150
|
| bsub | BG12075 dctP, ydbH; C4-dicarboxylate transport protein | 356 | 1.8e-99
|
| ecoli | gi|16131400 C4-dicarboxylate transport protein [Escherichia coli K12] | 384 | 5.5e-108
|
| paer | PA1183 [gene=dctA] [prot=C4-dicarboxylate transport protein] [comment=PA1183] | 401 | 6.0e-113
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| SDF | 1 | Sodium:dicarboxylate symporter family | 32-421 | 324.9 | 6.5e-97
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_189189119.1 | cation:dicarboxylase symporter family transporter [Streptomy...
| 1871 | 0.0e+00 |
| QIY98342.1 | cation:dicarboxylase symporter family transporter [Streptomyces s...
| 1857 | 0.0e+00 |
| WP_236584451.1 | cation:dicarboxylase symporter family transporter [Streptomy...
| 1855 | 0.0e+00 |
| WP_235029444.1 | cation:dicarboxylase symporter family transporter [Streptomy...
| 1852 | 0.0e+00 |
| QIY73517.1 | cation:dicarboxylase symporter family transporter [Streptomyces s...
| 1849 | 0.0e+00 |
| WP_067369410.1 | cation:dicarboxylase symporter family transporter [Streptomy...
| 1847 | 0.0e+00 |
| WP_099925382.1 | cation:dicarboxylase symporter family transporter [Streptomy...
| 1847 | 0.0e+00 |
| GGN77041.1 | C4-dicarboxylate transporter DctA [Streptomyces albiflavescens]
| 1846 | 0.0e+00 |
| WP_234469258.1 | cation:dicarboxylase symporter family transporter [Streptomy...
| 1844 | 0.0e+00 |
| WP_054233254.1 | cation:dicarboxylase symporter family transporter [Streptomy...
| 1843 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.5246 | Seems to have no N-terminal signal seq.
|