| ID | SAVERM_3012
| Type | CDS
|
| From | 3767924
| nt length | 414
|
| To | 3768337
| aa length | 137
|
| Gene | rsbW1
| pI | 4.19
|
| Definition | putative anti-sigma factor
| M.W (Da) | 14261
|
| Note |
| AseI frg. | N
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | regulation
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO5244 prs anti-sigma factor | 263 | 3.0e-93
|
| sgr | SGR_2270 putative anti-sigma factor | 255 | 3.0e-90
|
| sam | SAM23877_5034 putative Anti-sigma factor | 261 | 2.0e-92
|
| scab | SCAB30091 putative anti-sigma factor | 261 | 2.0e-92
|
| sace | SACE_4196 anti-sigma factor | 98 | 5.0e-28
|
| nfar | nfa1560 anti-sigma factor | 80 | 3.7e-17
|
| mtub | gi|57117083 ANTI-SIGMA FACTOR RSBW (SIGMA NEGATIVE EFFECTOR) [Mycobacterium tuberculosis H37Rv] | 56 | 4.5e-10
|
| bsub | BG10734 rsbW; negative regulator of sigma-B activity (switch protein/serine kinase, anti-sigma factor) | 62 | 1.3e-11
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; bsub, Bacillus subtilis;
Pfam search result
no hits.
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_202497422.1 | anti-sigma regulatory factor [Streptomyces sp. SID5469]
| 623 | 8.9e-82 |
| WP_055492491.1 | MULTISPECIES: anti-sigma regulatory factor [Streptomyces] >l...
| 617 | 5.5e-81 |
| WP_033525425.1 | MULTISPECIES: anti-sigma regulatory factor [Streptomyces] >l...
| 617 | 7.3e-81 |
| WP_033320057.1 | MULTISPECIES: anti-sigma regulatory factor [Streptomyces] >g...
| 616 | 7.9e-81 |
| WP_071369611.1 | anti-sigma regulatory factor [Streptomyces colonosanans] >gb...
| 615 | 1.1e-80 |
| WP_015657891.1 | MULTISPECIES: anti-sigma factor [Streptomyces] >lcl
| 613 | 2.2e-80 |
| WP_037695150.1 | MULTISPECIES: anti-sigma regulatory factor [Streptomyces] >g...
| 613 | 2.3e-80 |
| WP_103839295.1 | MULTISPECIES: anti-sigma regulatory factor [unclassified Str...
| 613 | 2.3e-80 |
| WP_055512819.1 | MULTISPECIES: anti-sigma regulatory factor [Streptomyces] >l...
| 613 | 2.3e-80 |
| WP_128379511.1 | MULTISPECIES: anti-sigma regulatory factor [Streptomyces] >g...
| 613 | 2.4e-80 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.2411 | Seems to have no N-terminal signal seq.
|