| ID | SAVERM_3043
| Type | CDS
|
| From | 3801425
| nt length | 1011
|
| To | 3802435
| aa length | 336
|
| Gene |
| pI | 7.94
|
| Definition | hypothetical protein
| M.W (Da) | 36827
|
| Note | PF03193: Protein of unknown function, DUF258
| AseI frg. | N
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | similar to unknown proteins
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO5211 conserved hypothetical protein | 589 | 0.0e+00
|
| sgr | SGR_2311 conserved hypothetical protein | 562 | 0.0e+00
|
| sam | SAM23877_4999 putative ribosome biogenesis GTPase RsgA | 586 | 0.0e+00
|
| scab | SCAB30431 hypothetical protein | 585 | 0.0e+00
|
| sace | SACE_6436 GTPase EngC | 310 | 2.0e-105
|
| nfar | nfa45900 hypothetical protein | 293 | 1.1e-80
|
| mtub | gi|15610364 hypothetical protein Rv3228 [Mycobacterium tuberculosis H37Rv] | 300 | 1.2e-82
|
| cglu | gi|19551989 COG1162:Predicted GTPases [Corynebacterium glutamicum] | 267 | 6.0e-73
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| RsgA_GTPase | 1 | RsgA GTPase | 95-271 | 148.7 | 1.3e-43
|
| MMR_HSR1 | 1 | 50S ribosome-binding GTPase | 206-267 | 29.5 | 6e-07
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_189189357.1 | ribosome small subunit-dependent GTPase A [Streptomyces albi...
| 1578 | 0.0e+00 |
| WP_148010377.1 | ribosome small subunit-dependent GTPase A [Streptomyces sp. ...
| 1576 | 0.0e+00 |
| WP_149511617.1 | ribosome small subunit-dependent GTPase A [Streptomyces apri...
| 1565 | 0.0e+00 |
| WP_168530142.1 | ribosome small subunit-dependent GTPase A [Streptomyces sp. ...
| 1563 | 0.0e+00 |
| WP_153288714.1 | ribosome small subunit-dependent GTPase A [Streptomyces fago...
| 1562 | 0.0e+00 |
| WP_190172816.1 | MULTISPECIES: ribosome small subunit-dependent GTPase A [Str...
| 1560 | 0.0e+00 |
| WP_060901334.1 | MULTISPECIES: ribosome small subunit-dependent GTPase A [unc...
| 1560 | 0.0e+00 |
| WP_181650089.1 | ribosome small subunit-dependent GTPase A [Streptomyces sp. ...
| 1560 | 0.0e+00 |
| WP_019058314.1 | ribosome small subunit-dependent GTPase A [Streptomyces prun...
| 1559 | 0.0e+00 |
| WP_075028836.1 | ribosome small subunit-dependent GTPase A [Streptomyces mira...
| 1557 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.6338 | Seems to have no N-terminal signal seq.
|