| ID | SAVERM_3072
| Type | CDS
|
| From | 3835520
| nt length | 2313
|
| To | 3833208
| aa length | 770
|
| Gene | uvrD2
| pI | 6.63
|
| Definition | putative ATP-dependent DNA helicase
| M.W (Da) | 83037
|
| Note | PF00580: UvrD/REP helicase
| AseI frg. | X
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | DNA modification & repair
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO5188 putative ATP-dependent DNA helicase | 1262 | 0.0e+00
|
| sgr | SGR_2337 putative ATP-dependent DNA helicase | 1165 | 0.0e+00
|
| sam | SAM23877_4971 ATP-dependent DNA helicase UvrD2 | 1246 | 0.0e+00
|
| scab | SCAB30721 putative ATP-dependent DNA helicase | 1240 | 0.0e+00
|
| sace | SACE_1092 ATP-dependent DNA helicase | 692 | 0.0e+00
|
| nfar | nfa45330 ATP-dependent DNA helicase | 664 | 0.0e+00
|
| mtub | gi|15610334 PROBABLE ATP-DEPENDENT DNA HELICASE II UVRD2 [Mycobacterium tuberculosis H37Rv] | 677 | 0.0e+00
|
| cglu | gi|19552005 COG0210:Superfamily I DNA and RNA helicases [Corynebacterium glutamicum] | 646 | 0.0e+00
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| UvrD-helicase | 2 | UvrD/REP helicase N-terminal domain | 62-149, 214-323 | 167.6 | 4.3e-49
|
| UvrD_C | 2 | UvrD-like helicase C-terminal domain | 331-447, 496-603 | 136.1 | 1.6e-39
|
| AAA_19 | 1 | AAA domain | 65-309 | 127.4 | 5e-37
|
| HRDC | 1 | HRDC domain | 692-757 | 75.1 | 3e-21
|
| UvrD_C_2 | 1 | UvrD-like helicase C-terminal domain | 544-599 | 41.3 | 9.4e-11
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_202498023.1 | ATP-dependent DNA helicase UvrD2 [Streptomyces sp. SID5469]
| 3478 | 0.0e+00 |
| WP_203732686.1 | ATP-dependent DNA helicase UvrD2 [Streptomyces sp. SID12501]
| 3158 | 0.0e+00 |
| WP_153288739.1 | ATP-dependent DNA helicase UvrD2 [Streptomyces fagopyri] >gb...
| 3148 | 0.0e+00 |
| NEC91991.1 | ATP-dependent DNA helicase UvrD2 [Streptomyces sp. SID12501]
| 3148 | 0.0e+00 |
|
| 3143 | 0.0e+00 |
| WP_223190175.1 | ATP-dependent DNA helicase UvrD2 [Streptomyces sp. TRM68416]
| 3141 | 0.0e+00 |
| WP_078629144.1 | ATP-dependent DNA helicase UvrD2 [Streptomyces sp. 142MFCol3...
| 3137 | 0.0e+00 |
| WP_211180126.1 | UvrD-helicase domain-containing protein [Streptomyces sp. RL...
| 3134 | 0.0e+00 |
| PAZ15394.1 | ATP-dependent DNA helicase [Streptomyces sp. SA15]
| 3129 | 0.0e+00 |
| WP_190188764.1 | ATP-dependent DNA helicase UvrD2 [Streptomyces minutisclerot...
| 3126 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.1107 | Seems to have no N-terminal signal seq.
|