| ID | SAVERM_3094
| Type | CDS
|
| From | 3868223
| nt length | 642
|
| To | 3868864
| aa length | 213
|
| Gene |
| pI | 6.24
|
| Definition | putative TetR-family transcriptional regulator
| M.W (Da) | 23298
|
| Note | PF00440: Bacterial regulatory proteins, tetR family
| AseI frg. | X
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | regulation
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO5170 putative tetR-family transcriptional regulator | 414 | 2.0e-150
|
| sgr | SGR_2355 putative TetR-family transcriptional regulator | 380 | 3.0e-137
|
| sam | SAM23877_4951 TetR family transcriptional regulator | 412 | 7.0e-150
|
| scab | SCAB30931 putative TetR-family transcriptional regulator | 412 | 1.0e-149
|
| sace | SACE_1068 transcriptional regulator, TetR family | 240 | 6.0e-82
|
| nfar | nfa45690 transcriptional regulator | 216 | 1.2e-57
|
| mtub | gi|15610344 PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY TETR-FAMILY) [Mycobacterium tuberculosis H37Rv] | 187 | 6.0e-49
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| TetR_N | 1 | Bacterial regulatory proteins, tetR family | 26-72 | 60.5 | 8.8e-17
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| NNN36450.1 | TetR/AcrR family transcriptional regulator [Streptomyces sp. S3(2...
| 933 | 1.2e-126 |
| WP_020130830.1 | MULTISPECIES: TetR/AcrR family transcriptional regulator [St...
| 932 | 2.2e-126 |
| WP_161146898.1 | TetR/AcrR family transcriptional regulator [Streptomyces sp....
| 931 | 2.2e-126 |
| WP_217167537.1 | TetR/AcrR family transcriptional regulator [Streptomyces sp....
| 931 | 2.4e-126 |
| WP_127178091.1 | TetR/AcrR family transcriptional regulator [Streptomyces gri...
| 931 | 3.1e-126 |
| WP_190150959.1 | TetR/AcrR family transcriptional regulator [Streptomyces hum...
| 931 | 3.1e-126 |
| WP_031033259.1 | MULTISPECIES: TetR/AcrR family transcriptional regulator [St...
| 930 | 3.7e-126 |
| WP_133887233.1 | TetR/AcrR family transcriptional regulator [Streptomyces sp....
| 930 | 4.1e-126 |
| WP_053755623.1 | TetR/AcrR family transcriptional regulator [Streptomyces sp....
| 929 | 4.9e-126 |
|
| 928 | 7.7e-126 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.4773 | Seems to have no N-terminal signal seq.
|