| ID | SAVERM_3119
| Type | CDS
|
| From | 3893260
| nt length | 246
|
| To | 3893015
| aa length | 81
|
| Gene |
| pI | 5.05
|
| Definition | hypothetical protein
| M.W (Da) | 8388
|
| Note | PF11314: Protein of unknown function (DUF3117)
| AseI frg. | E
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | similar to unknown proteins
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO5145 conserved hypothetical protein | 128 | 1.0e-41
|
| sgr | SGR_2380 conserved hypothetical protein | 106 | 3.0e-33
|
| sam | SAM23877_4924 hypothetical protein | 106 | 3.0e-33
|
| scab | SCAB31171 hypothetical protein | 127 | 5.0e-41
|
| sace | SACE_1029 hypothetical protein | 89 | 2.0e-26
|
| nfar | nfa47235 hypothetical protein | 98 | 5.7e-23
|
| mtub | gi|15608351 hypothetical protein Rv1211 [Mycobacterium tuberculosis H37Rv] | 100 | 2.3e-23
|
| cglu | gi|19552340 hypothetical protein, predicted by GeneMark hmm [Corynebacterium glutamicum] | 68 | 5.6e-14
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| DUF3117 | 1 | Protein of unknown function (DUF3117) | 30-79 | 99.2 | 7.6e-29
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
|
| 351 | 3.4e-42 |
| NEC87489.1 | DUF3117 domain-containing protein [Streptomyces sp. SID12501]
| 349 | 6.9e-42 |
| NEB30856.1 | DUF3117 domain-containing protein [Streptomyces sp. SID14446] >gb...
| 347 | 1.3e-41 |
| AVH56679.1 | DUF3117 domain-containing protein [Streptomyces dengpaensis] >gb
| 347 | 1.3e-41 |
|
| 346 | 3.0e-41 |
| ORT61204.1 | hypothetical protein BKD26_03805 [Streptomyces sp. CB03238]
| 339 | 2.8e-40 |
| NMI60758.1 | DUF3117 domain-containing protein [Streptomyces sp. RLA2-12] >gb
| 338 | 3.8e-40 |
| APU44587.1 | hypothetical protein BSL84_21905 [Streptomyces sp. TN58] >lcl
| 337 | 4.5e-40 |
| EFD66903.1 | conserved hypothetical protein [Streptomyces lividans TK24]
| 337 | 6.6e-40 |
| GHK00835.1 | hypothetical protein SY2F82_26320 [Streptomyces sp. Y2F8-2]
| 336 | 1.0e-39 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.2780 | Seems to have no N-terminal signal seq.
|