| ID | SAVERM_315
| Type | CDS
|
| From | 373063
| nt length | 918
|
| To | 373980
| aa length | 305
|
| Gene |
| pI | 8.6
|
| Definition | putative IS3 ISAav4-like family transposase
| M.W (Da) | 34621
|
| Note | IS3 family (372707..374011) Inverted repeat sequence (10/11 bp). Target sequence (CC)
| AseI frg. | A
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | transposon & IS
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO6337 putative transposase | 98 | 2.0e-24
|
| sgr | SGR_7113t putative transposase | 156 | 1.0e-46
|
| scab | SCAB81301 putative transposase | 565 | 0.0e+00
|
| sace | SACE_5120 transposase, IS3 family | 311 | 9.0e-107
|
| nfar | nfa44400 transposase | 63 | 1.6e-11
|
| mtub | gi|15610611 POSSIBLE TRANSPOSASE FOR INSERTION ELEMENT IS6110 [SECOND PART] [Mycobacterium tuberculosis H37Rv] | 201 | 5.1e-53
|
| cglu | gi|19552937 COG2801:Putative transposase [Corynebacterium glutamicum] | 135 | 1.8e-33
|
| ecoli | gi|16128990 putative transposase for IS3 [Escherichia coli K12] | 136 | 1.5e-33
|
| paer | PA0978 [gene=PA0978] [prot=conserved hypothetical protein] [comment=PA0978] | 133 | 2.3e-32
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| rve | 1 | Integrase core domain | 123-239 | 80.2 | 1.2e-22
|
| HTH_21 | 1 | HTH-like domain | 44-100 | 71.5 | 4.4e-20
|
| rve_2 | 1 | Integrase core domain | 229-283 | 49.6 | 3.1e-13
|
| rve_3 | 1 | Integrase core domain | 211-277 | 37.0 | 2e-09
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.1645 | Seems to have no N-terminal signal seq.
|