| ID | SAVERM_3211
| Type | CDS
|
| From | 4002836
| nt length | 1209
|
| To | 4004044
| aa length | 402
|
| Gene | xseA
| pI | 6.86
|
| Definition | putative exoribonuclease large subunit
| M.W (Da) | 43844
|
| Note | PF02601: Exonuclease VII, large subunit
| AseI frg. | E
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | RNA modification
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO5056 putative exoribonuclease large subunit | 707 | 0.0e+00
|
| sgr | SGR_2474 putative exoribonuclease large subunit | 654 | 0.0e+00
|
| sam | SAM23877_4854 Exodeoxyribonuclease 7 large subunit | 703 | 0.0e+00
|
| scab | SCAB33481 putative exoribonuclease large subunit | 707 | 0.0e+00
|
| sace | SACE_0937 putative exodeoxyribonuclease VII large subunit | 417 | 6.0e-146
|
| nfar | nfa47970 xseA exodeoxyribonuclease VII large subunit | 410 | 7.8e-116
|
| mtub | gi|15608248 exodeoxyribonuclease VII large subunit [Mycobacterium tuberculosis H37Rv] | 394 | 7.5e-111
|
| cglu | gi|19552246 COG1570:Exonuclease VII, large subunit [Corynebacterium glutamicum] | 379 | 1.3e-106
|
| bsub | BG11712 xseA, yqiB; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] | 182 | 3.0e-47
|
| ecoli | gi|16130434 exodeoxyribonuclease VII large subunit [Escherichia coli K12] | 185 | 4.0e-48
|
| paer | PA3777 [gene=xseA] [prot=exodeoxyribonuclease VII large subunit] [comment=PA3777] | 217 | 1.7e-57
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Exonuc_VII_L | 2 | Exonuclease VII, large subunit | 129-348, 334-398 | 238.5 | 1.1e-70
|
| tRNA_anti_2 | 1 | OB-fold nucleic acid binding domain | 12-105 | 60.4 | 1.4e-16
|
| tRNA_anti-codon | 1 | OB-fold nucleic acid binding domain | 30-108 | 36.0 | 4.9e-09
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_151479319.1 | exodeoxyribonuclease VII large subunit [Streptomyces albicer...
| 1736 | 0.0e+00 |
| WP_099499646.1 | MULTISPECIES: exodeoxyribonuclease VII large subunit [Strept...
| 1731 | 0.0e+00 |
| WP_200396076.1 | exodeoxyribonuclease VII large subunit [Streptomyces sp. ZYC...
| 1725 | 0.0e+00 |
| GHA13174.1 | exodeoxyribonuclease 7 large subunit [Streptomyces tauricus]
| 1725 | 0.0e+00 |
| WP_189769308.1 | exodeoxyribonuclease VII large subunit [Streptomyces tauricu...
| 1725 | 0.0e+00 |
| WP_143636669.1 | exodeoxyribonuclease VII large subunit [Streptomyces sp. IB2...
| 1724 | 0.0e+00 |
| WP_189837423.1 | exodeoxyribonuclease VII large subunit [Streptomyces umbrinu...
| 1722 | 0.0e+00 |
| WP_095936410.1 | exodeoxyribonuclease VII large subunit [Streptomyces sp. Tue...
| 1721 | 0.0e+00 |
| WP_210585612.1 | exodeoxyribonuclease VII large subunit [Streptomyces sp. GES...
| 1720 | 0.0e+00 |
| GGR02448.1 | exodeoxyribonuclease 7 large subunit [Streptomyces aurantiogrise...
| 1718 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.2702 | Seems to have no N-terminal signal seq.
|