| ID | SAVERM_3212
| Type | CDS
|
| From | 4004054
| nt length | 243
|
| To | 4004296
| aa length | 80
|
| Gene | xseB
| pI | 4.07
|
| Definition | putative exoribonuclease small subunit
| M.W (Da) | 8868
|
| Note | PF02609: Exonuclease VII small subunit
| AseI frg. | E
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | RNA modification
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO5055 putative exoribonuclease | 90 | 3.0e-26
|
| sgr | SGR_2475 putative exoribonuclease small subunit | 92 | 5.0e-27
|
| sam | SAM23877_4853 Exodeoxyribonuclease 7 small subunit | 97 | 4.0e-29
|
| scab | SCAB33491 putative exoribonuclease small subunit | 108 | 1.0e-33
|
| sace | SACE_0935 putative exodeoxyribonuclease VII small subunit | 75 | 1.0e-20
|
| nfar | nfa47980 xseB exodeoxyribonuclease VII small subunit | 82 | 7.2e-18
|
| mtub | gi|15608247 exodeoxyribonuclease VII small subunit [Mycobacterium tuberculosis H37Rv] | 79 | 4.3e-17
|
| cglu | gi|19552245 COG1722:Exonuclease VII small subunit [Corynebacterium glutamicum] | 65 | 3.7e-13
|
| ecoli | gi|16128407 exodeoxyribonuclease VII small subunit [Escherichia coli K12] | 46 | 2.5e-07
|
| paer | PA4042 [gene=xseB] [prot=exodeoxyribonuclease VII small subunit] [comment=PA4042] | 45 | 7.8e-07
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Exonuc_VII_S | 1 | Exonuclease VII small subunit | 16-65 | 65.9 | 2.3e-18
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_059129102.1 | MULTISPECIES: exodeoxyribonuclease VII small subunit [unclas...
| 306 | 2.6e-35 |
| WP_234517941.1 | exodeoxyribonuclease VII small subunit [Streptomyces glomera...
| 304 | 6.7e-35 |
| WP_150947265.1 | exodeoxyribonuclease VII small subunit [Streptomyces luteoli...
| 304 | 7.4e-35 |
| WP_071369383.1 | exodeoxyribonuclease VII small subunit [Streptomyces colonos...
| 299 | 2.5e-34 |
| WP_161066344.1 | exodeoxyribonuclease VII small subunit [Streptomyces sp. HUC...
| 300 | 2.6e-34 |
| WP_190138461.1 | exodeoxyribonuclease VII small subunit [Streptomyces longisp...
| 296 | 8.6e-34 |
| WP_180221113.1 | exodeoxyribonuclease VII small subunit [Streptomyces sp. UH6...
| 297 | 8.7e-34 |
| WP_055492333.1 | exodeoxyribonuclease VII small subunit [Streptomyces sp. TP-...
| 295 | 1.0e-33 |
| WP_141206780.1 | exodeoxyribonuclease VII small subunit [Streptomyces griseor...
| 294 | 2.0e-33 |
| WP_077966543.1 | exodeoxyribonuclease VII small subunit [Streptomyces tsukube...
| 293 | 3.2e-33 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.3382 | Seems to have no N-terminal signal seq.
|