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IDSAVERM_3318 TypeCDS
From4129545 nt length519
To4129027 aa length172
Genesig24 pI7.95
Definitionputative RNA polymerase ECF-subfamily sigma factor M.W (Da)19423
NotePF08281: Sigma-70, region 4 AseI frg.E
SignalP v.4.0Non-secretory protein | plot CategoryRNA initiation

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r4_21Sigma-70, region 4100-15362.22.5e-17

Sigma70_r21Sigma-70 region 212-7853.21.7e-14

Sigma70_r41Sigma-70, region 4106-15336.22.9e-09

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_108152205.1 SigE family RNA polymerase sigma factor [Streptomyces lunael... 7122.3e-94
WP_037884579.1 SigE family RNA polymerase sigma factor [Streptomyces sp. NR... 7099.4e-94
WP_175302971.1 SigE family RNA polymerase sigma factor [Streptomyces lunael... 7062.3e-93
WP_150493392.1 SigE family RNA polymerase sigma factor [Streptomyces kanamy... 7012.0e-92
WP_190082122.1 SigE family RNA polymerase sigma factor [Streptomyces longis... 6984.6e-92
WP_181655304.1 SigE family RNA polymerase sigma factor [Streptomyces himala... 6901.6e-90
WP_098244575.1 SigE family RNA polymerase sigma factor [Streptomyces formic... 6831.1e-89
WP_189728163.1 SigE family RNA polymerase sigma factor [Streptomyces aureov... 6803.6e-89
WP_200401091.1 SigE family RNA polymerase sigma factor [Streptomyces sp. ZY... 6794.4e-89
WP_156725886.1 SigE family RNA polymerase sigma factor [Streptomyces apocyn... 6775.9e-89

PSORT result

LocalizationCertaintyPSORT said
cytoplasm0.4712 Seems to have no N-terminal signal seq.