| ID | SAVERM_3346
| Type | CDS
|
| From | 4162733
| nt length | 990
|
| To | 4163722
| aa length | 329
|
| Gene | deoC
| pI | 7.57
|
| Definition | putative deoxyribose-phosphate aldolase
| M.W (Da) | 34416
|
| Note | PF01791: Deoxyribose-phosphate aldolase
| AseI frg. | E
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | metabolism of nucleotides & nucleic acids
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO4914 putative deoxyribose-phosphate aldolase | 593 | 0.0e+00
|
| sgr | SGR_2629 putative deoxyribose-phosphate aldolase | 547 | 0.0e+00
|
| sam | SAM23877_4733 Deoxyribose-phosphate aldolase | 595 | 0.0e+00
|
| scab | SCAB34741 putative deoxyribose-phosphate aldolase | 582 | 0.0e+00
|
| sace | SACE_6564 putative deoxyribose-phosphate aldolase | 414 | 9.0e-147
|
| nfar | nfa52030 deoC deoxyribose-phosphate aldolase | 94 | 9.6e-21
|
| mtub | gi|15607619 deoxyribose-phosphate aldolase [Mycobacterium tuberculosis H37Rv] | 103 | 1.2e-23
|
| cglu | gi|19551629 COG0274:Deoxyribose-phosphate aldolase [Corynebacterium glutamicum] | 89 | 2.2e-19
|
| bsub | BG10983 dra; deoxyribose-phosphate aldolase [EC:4.1.2.4] | 95 | 2.9e-21
|
| ecoli | gi|16132198 deoxyribose-phosphate aldolase [Escherichia coli K12] | 194 | 5.2e-51
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| DeoC | 1 | DeoC/LacD family aldolase | 65-308 | 95.9 | 2.5e-27
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_187285716.1 | deoxyribose-phosphate aldolase [Streptomyces sp. me109]
| 1503 | 0.0e+00 |
| WP_153292934.1 | deoxyribose-phosphate aldolase [Streptomyces fagopyri] >gb
| 1493 | 0.0e+00 |
| WP_097227479.1 | deoxyribose-phosphate aldolase [Streptomyces sp. OV198] >emb...
| 1492 | 0.0e+00 |
| WP_031180694.1 | deoxyribose-phosphate aldolase [Streptomyces seoulensis] >gb...
| 1491 | 0.0e+00 |
| WP_067367770.1 | deoxyribose-phosphate aldolase [Streptomyces olivochromogene...
| 1490 | 0.0e+00 |
| WP_161199402.1 | deoxyribose-phosphate aldolase [Streptomyces sp. SID1328]
| 1489 | 0.0e+00 |
| WP_095857823.1 | deoxyribose-phosphate aldolase [Streptomyces sp. Ag82_O1-15]...
| 1487 | 0.0e+00 |
| WP_168529907.1 | deoxyribose-phosphate aldolase [Streptomyces sp. RPA4-2] >gb...
| 1487 | 0.0e+00 |
| GHD52324.1 | 2-deoxyribose-5-phosphate aldolase [Streptomyces mirabilis]
| 1487 | 0.0e+00 |
| WP_099925423.1 | MULTISPECIES: deoxyribose-phosphate aldolase [Streptomyces]
| 1487 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.3127 | Seems to have no N-terminal signal seq.
|