-- | --

IDSAVERM_3363 TypeCDS
From4179014 nt length1005
To4180018 aa length334
Genesig26 pI4.44
Definitionputative RNA polymerase ECF-subfamily sigma factor M.W (Da)36685
Notesimilar to SCO4895, PF04542: Sigma-70 region 2 AseI frg.E
SignalP v.4.0Non-secretory protein | plot CategoryRNA initiation

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
coelSCO4895 putative ECF sigma factor5970.0e+00
sgrSGR_2646 putative RNA polymerase ECF-subfamily sigma factor5180.0e+00
samSAM23877_4717 ECF RNA polymerase sigma factor SigG5920.0e+00
scabSCAB34911 putative RNA polymerase sigma factor5880.0e+00
nfarnfa5260 sigma factor3322.8e-92
mtubgi|15607323 RNA polymerase sigma-70 factor [Mycobacterium tuberculosis H37Rv]2353.6e-63

*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 215-7873.39.4e-21

Sigma70_r4_21Sigma-70, region 4133-18655.62.8e-15

NTF21Nuclear transport factor 2 (NTF2) domain207-26734.03.4e-08

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_147993322.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 15350.0e+00
WP_062721933.1 sigma-70 family RNA polymerase sigma factor [Streptomyces ca... 15280.0e+00
15260.0e+00
WP_097252774.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 15230.0e+00
NUP22610.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp.] 15200.0e+00
WP_217209278.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 15180.0e+00
WP_234764650.1 sigma-70 family RNA polymerase sigma factor [Streptomyces mu... 15180.0e+00
WP_048587076.1 sigma-70 family RNA polymerase sigma factor [Streptomyces vi... 15160.0e+00
WP_067002418.1 sigma-70 family RNA polymerase sigma factor [Streptomyces ce... 15160.0e+00
WP_128433333.1 sigma-70 family RNA polymerase sigma factor [Streptomyces cy... 15150.0e+00

PSORT result

LocalizationCertaintyPSORT said
cytoplasm0.3794 Seems to have no N-terminal signal seq.