| ID | SAVERM_3365
| Type | CDS
|
| From | 4181710
| nt length | 1284
|
| To | 4180427
| aa length | 427
|
| Gene | deoA
| pI | 4.72
|
| Definition | putative thymidine phosphorylase
| M.W (Da) | 44557
|
| Note | PF07831: Pyrimidine nucleoside phosphorylase C-terminal domain
| AseI frg. | E
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | metabolism of nucleotides & nucleic acids
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO4890 deoA thymidine phosphorylase | 778 | 0.0e+00
|
| sgr | SGR_2649 putative thymidine phosphorylase | 759 | 0.0e+00
|
| sam | SAM23877_4712 Thymidine phosphorylase | 775 | 0.0e+00
|
| scab | SCAB34921 putative thymidine phosphorylase | 786 | 0.0e+00
|
| sace | SACE_6575 thymidine phosphorylase | 565 | 0.0e+00
|
| nfar | nfa9510 deoA thymidine phosphorylase | 569 | 1.8e-163
|
| mtub | gi|15610450 thymidine phosphorylase [Mycobacterium tuberculosis H37Rv] | 501 | 4.7e-143
|
| bsub | BG10985 pdp; pyrimidine-nucleoside phosphorylase [EC:2.4.2.2] | 340 | 1.2e-94
|
| ecoli | gi|16132199 thymidine phosphorylase [Escherichia coli K12] | 297 | 1.0e-81
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Glycos_transf_3 | 1 | Glycosyl transferase family, a/b domain | 79-289 | 114.3 | 6.3e-33
|
| PYNP_C | 1 | Pyrimidine nucleoside phosphorylase C-terminal domain | 337-409 | 86.2 | 7.9e-25
|
| Glycos_trans_3N | 1 | Glycosyl transferase family, helical bundle domain | 8-68 | 65.7 | 2.3e-18
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.1638 | Seems to have no N-terminal signal seq.
|