-- | --

IDSAVERM_3387 TypeCDS
From4208843 nt length690
To4208154 aa length229
Genesig28 pI9.65
Definitionputative RNA polymerase ECF-subfamily sigma factor M.W (Da)24668
NotePF04542: Sigma-70 region 2 AseI frg.E
SignalP v.4.0Non-secretory protein | plot CategoryRNA initiation

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
coelSCO4864 putative ECF sigma factor3265.0e-115
samSAM23877_4682 putative ECF sigma factor3306.0e-117
scabSCAB35201 putative RNA polymerase sigma factor3572.0e-127

*coel, Streptomyces coelicolor A3(2); sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 260-12447.97.7e-13

Sigma70_r4_21Sigma-70, region 4159-20839.33.4e-10

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_225966855.1 RNA polymerase sigma factor [Streptomyces stelliscabiei] 8432.1e-112
WP_237547584.1 RNA polymerase sigma factor [Streptomyces sp. SID5476] 8284.1e-110
WP_234045293.1 RNA polymerase sigma factor [Streptomyces adelaidensis] 8275.8e-110
WP_221524223.1 RNA polymerase sigma factor [Streptomyces sp. MNU76] >lcl 8255.9e-110
MPY51628.1 RNA polymerase sigma factor [Streptomyces acidicola] 8277.4e-110
WP_131563902.1 RNA polymerase sigma factor [Streptomyces sp. KM273126] 8269.3e-110
WP_231885250.1 RNA polymerase sigma factor [Streptomyces scabiei] 8224.0e-109
CBG70611.1 putative sigma factor [Streptomyces scabiei 87.22] 8224.3e-109
WP_194238794.1 RNA polymerase sigma factor [Streptomyces spongiae] 8234.4e-109
WP_234386893.1 RNA polymerase sigma factor [Streptomyces scabiei] 8145.7e-108

PSORT result

LocalizationCertaintyPSORT said
cytoplasm0.2208 Seems to have no N-terminal signal seq.