| ID | SAVERM_3436
| Type | CDS
|
| From | 4260496
| nt length | 990
|
| To | 4259507
| aa length | 329
|
| Gene | mdh
| pI | 4.76
|
| Definition | putative malate/lactate dehydrogenase
| M.W (Da) | 34689
|
| Note | PF02866: lactate/malate dehydrogenase, alpha/beta C-terminal domain
| AseI frg. | E
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | TCA cycle
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO4827 mdh malate dehydrogenase | 617 | 0.0e+00
|
| sgr | SGR_2711 putative malate dehydrogenase | 577 | 0.0e+00
|
| sam | SAM23877_4639 Malate dehydrogenase | 604 | 0.0e+00
|
| scab | SCAB35681 putative malate/lactate dehydrogenase | 607 | 0.0e+00
|
| sace | SACE_3674 malate dehydrogenase | 533 | 0.0e+00
|
| nfar | nfa36620 mdh malate dehydrogenase | 454 | 3.6e-129
|
| mtub | gi|15608380 malate dehydrogenase [Mycobacterium tuberculosis H37Rv] | 464 | 4.6e-132
|
| cglu | gi|19553579 COG0039:Malate/lactate dehydrogenases [Corynebacterium glutamicum] | 398 | 1.7e-112
|
| ecoli | gi|16131126 malate dehydrogenase [Escherichia coli K12] | 56 | 1.7e-09
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; ecoli, Escherichia coli K-12;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Ldh_1_C | 1 | lactate/malate dehydrogenase, alpha/beta C-terminal domain | 157-323 | 119.0 | 1.8e-34
|
| Ldh_1_N | 1 | lactate/malate dehydrogenase, NAD binding domain | 7-147 | 105.9 | 1.6e-30
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.0056 | Seems to have no N-terminal signal seq.
|