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IDSAVERM_3490 TypeCDS
From4323274 nt length921
To4324194 aa length306
Genesig29 pI4.72
Definitionputative RNA polymerase sigma factor M.W (Da)34066
Notesimilar to SCO3068:sigI, RNA polymerase alternative sigma factor, PF04539: Sigma-70 region 3 AseI frg.E
SignalP v.4.0Non-secretory protein | plot CategoryRNA initiation

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
coelSCO3068 sig15 putative RNA polymerase sigma factor5300.0e+00
sgrSGR_4466 putative RNA polymerase sigma factor4882.0e-176
samSAM23877_3119 RNA polymerase sigma-F factor5200.0e+00
scabSCAB54751 putative RNA polymerase sigma factor5330.0e+00

*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r41Sigma-70, region 4252-30072.31.5e-20

Sigma70_r31Sigma-70 region 3165-23160.11.5e-16

Sigma70_r21Sigma-70 region 285-15458.73.2e-16

Sigma70_r4_21Sigma-70, region 4251-29840.61.3e-10

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_067024876.1 RNA polymerase sigma factor SigF [Streptomyces dysideae] >gb... 13360.0e+00
WP_119102759.1 MULTISPECIES: RNA polymerase sigma factor SigF [Streptomyces... 13350.0e+00
WP_164430239.1 RNA polymerase sigma factor SigF [Streptomyces sp. SID13726]... 13320.0e+00
WP_200423564.1 RNA polymerase sigma factor SigF [Streptomyces sp. Y2F8-2] 13300.0e+00
WP_067433921.1 RNA polymerase sigma factor SigF [Streptomyces lincolnensis]... 13300.0e+00
WP_200307799.1 RNA polymerase sigma factor SigF [Streptomyces adelaidensis] 13290.0e+00
WP_189782729.1 RNA polymerase sigma factor SigF [Streptomyces capitiformica... 13290.0e+00
WP_232029350.1 RNA polymerase sigma factor SigF [Streptomyces lincolnensis]... 13290.0e+00
GHK05819.1 RNA polymerase sigma factor [Streptomyces sp. Y2F8-2] 13290.0e+00
WP_107082712.1 RNA polymerase sigma factor SigF [Streptomyces resistomycifi... 13290.0e+00

PSORT result

LocalizationCertaintyPSORT said
cytoplasm0.5382 Seems to have no N-terminal signal seq.