| ID | SAVERM_3589
| Type | CDS
|
| From | 4444062
| nt length | 888
|
| To | 4443175
| aa length | 295
|
| Gene |
| pI | 5.55
|
| Definition | putative deoxyribonuclease
| M.W (Da) | 31324
|
| Note | PF01026: TatD related DNase
| AseI frg. | E
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | DNA modification & repair
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO3151 hypothetical protein | 471 | 2.0e-170
|
| sgr | SGR_4354 putative deoxyribonuclease | 433 | 3.0e-155
|
| sam | SAM23877_3198 hypothetical protein | 477 | 1.0e-172
|
| scab | SCAB53831 putative deoxyribonuclease | 526 | 0.0e+00
|
| sace | SACE_0800 putative deoxyribonuclease | 225 | 2.0e-73
|
| nfar | nfa49050 DNase | 225 | 4.1e-60
|
| mtub | gi|15608148 PROBABLE DEOXYRIBONUCLEASE TATD (YJJV PROTEIN) [Mycobacterium tuberculosis H37Rv] | 202 | 2.2e-53
|
| cglu | gi|19552134 COG0084:Mg-dependent DNase [Corynebacterium glutamicum] | 174 | 5.9e-45
|
| bsub | BG10102 yabD; putative deoxyribonuclease [EC:3.1.21.-] | 142 | 3.1e-35
|
| ecoli | gi|16129063 putative hydrolase [Escherichia coli K12] | 150 | 1.3e-37
|
| paer | PA2959 [gene=PA2959] [prot=conserved hypothetical protein] [comment=PA2959] | 164 | 1.2e-41
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| TatD_DNase | 1 | TatD related DNase | 26-293 | 230.7 | 1.7e-68
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.1877 | Seems to have no N-terminal signal seq.
|