| ID | SAVERM_3609
| Type | CDS
|
| From | 4466871
| nt length | 462
|
| To | 4467332
| aa length | 153
|
| Gene |
| pI | 5.34
|
| Definition | putative MarR-family transcriptional regulator
| M.W (Da) | 16805
|
| Note | PF01047: MarR family
| AseI frg. | E
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | regulation
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| scab | SCAB53391 putative MarR-family transcriptional regulator | 209 | 2.0e-70
|
| sace | SACE_0188 transcriptional regulator, MarR-family | 177 | 1.0e-58
|
| nfar | nfa44020 transcriptional regulator | 152 | 1.2e-38
|
| mtub | gi|15610024 PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium tuberculosis H37Rv] | 50 | 6.8e-08
|
| bsub | BG13239 ykmA; similar to hypothetical proteins | 131 | 1.6e-32
|
| paer | PA2849 [gene=PA2849] [prot=probable transcriptional regulator] [comment=PA2849] | 133 | 6.2e-33
|
*scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; bsub, Bacillus subtilis; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| MarR | 1 | MarR family | 40-98 | 63.8 | 9.7e-18
|
| MarR_2 | 1 | MarR family | 38-97 | 48.8 | 4.6e-13
|
| HTH_27 | 1 | Winged helix DNA-binding domain | 40-106 | 42.7 | 5.6e-11
|
| TrmB | 1 | Sugar-specific transcriptional regulator TrmB | 36-92 | 33.0 | 3.9e-08
|
| HTH_20 | 1 | Helix-turn-helix domain | 47-92 | 29.0 | 7.7e-07
|
| HTH_5 | 1 | Bacterial regulatory protein, arsR family | 48-87 | 28.3 | 1.1e-06
|
| Penicillinase_R | 1 | Penicillinase repressor | 47-93 | 27.3 | 3.5e-06
|
| TFIIE_alpha | 1 | TFIIE alpha subunit | 45-97 | 24.5 | 1.7e-05
|
| HTH_24 | 1 | Winged helix-turn-helix DNA-binding | 46-86 | 24.0 | 1.9e-05
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_202498110.1 | MarR family transcriptional regulator [Streptomyces sp. SID5...
| 591 | 1.3e-76 |
| WP_062927338.1 | MarR family transcriptional regulator [Streptomyces qaidamen...
| 576 | 3.1e-74 |
| WP_033312105.1 | MarR family transcriptional regulator [Streptomyces iakyrus]
| 574 | 8.5e-74 |
|
| 574 | 8.7e-74 |
| WP_030844959.1 | MarR family transcriptional regulator [Streptomyces sp. NRRL...
| 573 | 1.0e-73 |
| WP_055490314.1 | MarR family transcriptional regulator [Streptomyces sp. TP-A...
| 573 | 1.2e-73 |
| WP_184847255.1 | MarR family transcriptional regulator [Streptomyces violaceo...
| 571 | 2.1e-73 |
| WP_189726828.1 | MarR family transcriptional regulator [Streptomyces purpuras...
| 570 | 2.8e-73 |
| WP_184984645.1 | MarR family transcriptional regulator [Streptomyces caelesti...
| 570 | 3.3e-73 |
|
| 570 | 3.3e-73 |
PSORT result
| Localization | Certainty | PSORT said
|
| Not Clear | | Seems to have no N-terminal signal seq.
|