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IDSAVERM_3694 TypeCDS
From4573081 nt length996
To4572086 aa length331
Genesig30 pI5.05
Definitionputative RNA polymerase sigma factor M.W (Da)37064
Notesimilar to SCO3202:hrdD, sigma-70 family, PF04539: Sigma-70 region 3 AseI frg.G1
SignalP v.4.0Non-secretory protein | plot CategoryRNA initiation

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
coelSCO3202 RNA polymerase principal sigma factor6000.0e+00
sgrSGR_4276 RNA polymerase principal sigma factor hrdD5720.0e+00
samSAM23877_3251 RNA polymerase principal sigma factor HrdD5990.0e+00
scabSCAB52911 putative RNA polymerase sigma factor6080.0e+00

*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r31Sigma-70 region 3178-25489.31.2e-25

Sigma70_r21Sigma-70 region 299-16973.29.8e-21

Sigma70_r41Sigma-70, region 4268-32053.51.1e-14

Sigma70_r1_21Sigma-70 factor, region 1.233-6643.03e-11

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_217236211.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 14750.0e+00
WP_151478263.1 sigma-70 family RNA polymerase sigma factor [Streptomyces al... 14650.0e+00
WP_128431506.1 sigma-70 family RNA polymerase sigma factor [Streptomyces cy... 14630.0e+00
WP_053754498.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 14630.0e+00
WP_190191806.1 sigma-70 family RNA polymerase sigma factor [Streptomyces mi... 14610.0e+00
WP_184598046.1 sigma-70 family RNA polymerase sigma factor [Streptomyces vi... 14600.0e+00
WP_010035431.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 14600.0e+00
WP_093904666.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 14600.0e+00
KDN79152.1 RNA polymerase sigma factor SigB [Streptomyces olindensis] 14590.0e+00
WP_086564731.1 sigma-70 family RNA polymerase sigma factor [Streptomyces af... 14590.0e+00

PSORT result

LocalizationCertaintyPSORT said
cytoplasm0.1549 Seems to have no N-terminal signal seq.