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IDSAVERM_3844 TypeCDS
From4748570 nt length582
To4749151 aa length193
Genesig31 pI11.15
Definitionputative RNA polymerase ECF-subfamily sigma factor M.W (Da)21681
Notesimilar to SCO4409, PF04542: Sigma-70 region 2 AseI frg.G1
SignalP v.4.0Non-secretory protein | plot CategoryRNA initiation

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
coelSCO4409 putative RNA polymerase sigma factor2882.0e-101
sgrSGR_3060 putative RNA polymerase ECF-subfamily sigma factor1611.0e-51
samSAM23877_3326 RNA polymerase sigma factor2904.0e-102
scabSCAB51521 putative RNA polymerase sigma factor2861.0e-100
ecoligi|49176470 hypothetical protein b4189 [Escherichia coli K12]291.8e-01

*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; ecoli, Escherichia coli K-12;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 229-9442.73.3e-11

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_109496771.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 5792.0e-73
WP_079310503.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 5783.0e-73
WP_151480024.1 sigma-70 family RNA polymerase sigma factor [Streptomyces al... 5783.2e-73
WP_194080859.1 sigma-70 family RNA polymerase sigma factor [Streptomyces ju... 5732.2e-72
WP_103554083.1 sigma-70 family RNA polymerase sigma factor [Streptomyces po... 5722.8e-72
WP_095854032.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 5697.5e-72
WP_067372000.1 sigma-70 family RNA polymerase sigma factor [Streptomyces ol... 5698.2e-72
WP_054235636.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 5681.0e-71
WP_097225549.1 sigma-70 family RNA polymerase sigma factor [Streptomyces sp... 5671.4e-71
WP_168492805.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [S... 5671.4e-71

PSORT result

LocalizationCertaintyPSORT said
cytoplasm0.2848 Seems to have no N-terminal signal seq.