| ID | SAVERM_3855
| Type | CDS
|
| From | 4762988
| nt length | 693
|
| To | 4762296
| aa length | 230
|
| Gene | ideR
| pI | 4.54
|
| Definition | putative iron dependent regulatory protein (DtxR)
| M.W (Da) | 25198
|
| Note | PF02742: Iron dependent repressor, metal binding and dimerisation domain
| AseI frg. | G1
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | regulation
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO4394 iron repressor | 440 | 3.0e-160
|
| sgr | SGR_3072 putative iron dependent regulatory protein | 432 | 4.0e-157
|
| sam | SAM23877_3336 Iron-dependent repressor IdeR | 439 | 9.0e-160
|
| scab | SCAB51401 putative iron dependent regulatory protein (DtxR) | 444 | 2.0e-161
|
| sace | SACE_1776 iron (metal) dependent repressor, DtxR family | 186 | 1.0e-60
|
| nfar | nfa37790 ideR transcriptional regulator | 274 | 5.5e-75
|
| mtub | gi|15609848 IRON-DEPENDENT REPRESSOR AND ACTIVATOR IDER [Mycobacterium tuberculosis H37Rv] | 261 | 2.2e-71
|
| cglu | gi|19553124 COG1321:Mn-dependent transcriptional regulator [Corynebacterium glutamicum] | 231 | 2.9e-62
|
| ecoli | gi|16128785 conserved protein, Winged helix domain [Escherichia coli K12] | 45 | 2.4e-06
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; ecoli, Escherichia coli K-12;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Fe_dep_repr_C | 1 | Iron dependent repressor, metal binding and dimerisation domain | 65-133 | 100.9 | 2.8e-29
|
| Fe_dep_repress | 1 | Iron dependent repressor, N-terminal DNA binding domain | 4-62 | 69.6 | 1.7e-19
|
| FeoA | 1 | FeoA domain | 154-228 | 30.6 | 2.9e-07
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_099504066.1 | MULTISPECIES: metal-dependent transcriptional regulator [Str...
| 1158 | 2.2e-160 |
| WP_030734521.1 | metal-dependent transcriptional regulator [Streptomyces sp. ...
| 1158 | 2.6e-160 |
| WP_093724326.1 | metal-dependent transcriptional regulator [Streptomyces sp. ...
| 1157 | 3.0e-160 |
| WP_123437120.1 | metal-dependent transcriptional regulator [Streptomyces sp. ...
| 1157 | 3.2e-160 |
| WP_189186237.1 | metal-dependent transcriptional regulator [Streptomyces albi...
| 1157 | 3.4e-160 |
| WP_225824498.1 | metal-dependent transcriptional regulator [Streptomyces sp. ...
| 1157 | 3.7e-160 |
| WP_145876175.1 | metal-dependent transcriptional regulator [Streptomyces sp. ...
| 1157 | 3.8e-160 |
| WP_028802813.1 | metal-dependent transcriptional regulator [Streptomyces sp. ...
| 1156 | 5.1e-160 |
| WP_095935053.1 | metal-dependent transcriptional regulator [Streptomyces sp. ...
| 1155 | 7.2e-160 |
| WP_076087216.1 | metal-dependent transcriptional regulator [Streptomyces sp. ...
| 1155 | 7.4e-160 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.2908 | Seems to have no N-terminal signal seq.
|