| ID | SAVERM_3862
| Type | CDS
|
| From | 4771207
| nt length | 600
|
| To | 4770608
| aa length | 199
|
| Gene |
| pI | 6.37
|
| Definition | putative TetR-family transcriptional regulator
| M.W (Da) | 21642
|
| Note | PF00440: Bacterial regulatory proteins, tetR family
| AseI frg. | G1
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | regulation
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO4385 putative tetR-family transcriptional regulator | 335 | 2.0e-119
|
| sgr | SGR_3089 putative TetR-family transcriptional regulator | 321 | 6.0e-114
|
| sam | SAM23877_3341 TetR family transcriptional regulator | 338 | 7.0e-121
|
| scab | SCAB51321 putative TetR-family transcriptional regulator | 330 | 5.0e-117
|
| sace | SACE_3244 TetR-family transcriptional regulator | 243 | 3.0e-83
|
| nfar | nfa53260 transcriptional regulator | 213 | 1.2e-56
|
| mtub | gi|15610049 PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY TETR-FAMILY) [Mycobacterium tuberculosis H37Rv] | 61 | 4.5e-11
|
| cglu | gi|19552754 COG1309:Transcriptional regulator [Corynebacterium glutamicum] | 56 | 1.0e-09
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| TetR_N | 1 | Bacterial regulatory proteins, tetR family | 23-69 | 49.6 | 2.3e-13
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_078972899.1 | TetR/AcrR family transcriptional regulator [Streptomyces sp....
| 938 | 1.7e-127 |
| WP_037888026.1 | TetR/AcrR family transcriptional regulator [Streptomyces vir...
| 930 | 1.6e-126 |
| WP_062153535.1 | TetR/AcrR family transcriptional regulator [Streptomyces cur...
| 930 | 1.9e-126 |
| WP_210582217.1 | TetR/AcrR family transcriptional regulator [Streptomyces sp....
| 927 | 3.4e-126 |
| WP_145876160.1 | TetR/AcrR family transcriptional regulator [Streptomyces sp....
| 925 | 8.3e-126 |
|
| 921 | 3.4e-125 |
| WP_093904493.1 | TetR/AcrR family transcriptional regulator [Streptomyces sp....
| 922 | 3.5e-125 |
| WP_141313421.1 | TetR/AcrR family transcriptional regulator [Streptomyces spi...
| 920 | 4.0e-125 |
| NUP22351.1 | TetR/AcrR family transcriptional regulator [Streptomyces sp.] >gb...
| 921 | 4.0e-125 |
| WP_053848988.1 | TetR/AcrR family transcriptional regulator [Streptomyces sp....
| 921 | 4.1e-125 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.4386 | Seems to have no N-terminal signal seq.
|