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IDSAVERM_3888 TypeCDS
From4803733 nt length699
To4804431 aa length232
Genesig32 pI11.15
Definitionputative RNA polymerase ECF-subfamily sigma factor M.W (Da)24993
NotePF04542: Sigma-70 region 2 AseI frg.G1
SignalP v.4.0Non-secretory protein | plot CategoryRNA initiation

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
coelSCO5934 putative sigma factor1351.0e-40
sgrSGR_4267 putative RNA polymerase ECF-subfamily sigma factor1831.0e-58
samSAM23877_6676 putative RNA polymerase ECF-subfamily sigma factor1655.0e-52
scabSCAB52551 putative RNA polymerase sigma factor2511.0e-85

*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r21Sigma-70 region 220-8862.81.7e-17

Sigma70_r4_21Sigma-70, region 4124-17351.74.8e-14

Sigma70_r41Sigma-70, region 4126-17540.71.2e-10

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
GGN60408.1 hypothetical protein GCM10011579_025480 [Streptomyces albiflaves... 6662.1e-85
WP_189186480.1 RNA polymerase sigma factor [Streptomyces albiflavescens] 6643.3e-85
WP_067018659.1 RNA polymerase sigma factor [Streptomyces dysideae] >gb 6539.1e-84
PVE05897.1 RNA polymerase sigma factor [Streptomyces scopuliridis RB72] 6551.3e-83
WP_190228877.1 RNA polymerase sigma factor [Streptomyces umbrinus] >dbj 6513.4e-83
WP_189836733.1 RNA polymerase sigma factor [Streptomyces umbrinus] >dbj 6513.5e-83
WP_143639463.1 RNA polymerase sigma factor [Streptomyces sp. IB201691-2A2] ... 6506.1e-83
WP_055614672.1 RNA polymerase sigma factor [Streptomyces phaeochromogenes] 6462.7e-82
WP_142265298.1 MULTISPECIES: sigma-70 family RNA polymerase sigma factor [u... 6436.6e-82
WP_037728392.1 RNA polymerase sigma factor [Streptomyces scopuliridis] 6428.6e-82

PSORT result

LocalizationCertaintyPSORT said
cytoplasm0.1546 Seems to have no N-terminal signal seq.