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IDSAVERM_3892 TypeCDS
From4808809 nt length573
To4808237 aa length190
Gene pI8.5
Definitionputative 2’-5’ RNA ligase M.W (Da)20669
NotePF02834: 2',5' RNA ligase family AseI frg.G1
SignalP v.4.0Non-secretory protein | plot CategoryRNA modification

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
coelSCO4338 hypothetical protein2416.0e-83
sgrSGR_6923 conserved hypothetical protein892.0e-23
samSAM23877_3367 2'-5' RNA ligase2752.0e-96
scabSCAB51001 putative 2'-5' RNA ligase2576.0e-89
cglugi|19553522 COG1514:2'-5' RNA ligase [Corynebacterium glutamicum]966.4e-22
bsubBG13878 ytlP; similar to ABC transporter (permease)408.9e-05
ecoligi|49176001 2'-5' RNA ligase [Escherichia coli K12]445.3e-06

*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

LigT_PEase2LigT like Phosphoesterase9-90, 99-17196.85.9e-28

2_5_RNA_ligase212'-5' RNA ligase superfamily37-16458.37.3e-16

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_210588965.1 RNA 2',3'-cyclic phosphodiesterase [Streptomyces sp. GESEQ-3... 7529.6e-100
WP_193504936.1 RNA 2',3'-cyclic phosphodiesterase [Streptomyces bellus] >db... 7329.6e-97
WP_048581220.1 RNA 2',3'-cyclic phosphodiesterase [Streptomyces viridochrom... 7283.6e-96
WP_210582166.1 RNA 2',3'-cyclic phosphodiesterase [Streptomyces sp. GESEQ-4... 7284.7e-96
WP_093746447.1 MULTISPECIES: RNA 2',3'-cyclic phosphodiesterase [unclassifi... 7198.7e-95
WP_126901284.1 RNA 2',3'-cyclic phosphodiesterase [Streptomyces sp. WAC 013... 7172.1e-94
WP_125524993.1 MULTISPECIES: RNA 2',3'-cyclic phosphodiesterase [Streptomyc... 7163.1e-94
QWA22913.1 RNA 2',3'-cyclic phosphodiesterase [Streptomyces sp. JCM17656] 7153.5e-94
WP_152895521.1 RNA 2',3'-cyclic phosphodiesterase [Streptomyces adustus] >g... 7164.8e-94
EPJ38351.1 putative UPF0097 protein in malA 3'region [Streptomyces afghanien... 7145.3e-94

PSORT result

LocalizationCertaintyPSORT said
cytoplasm0.2569 Seems to have no N-terminal signal seq.